Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72073 | Canola | nucleus | 79.73 | 76.96 |
| Bra007300.1-P | Field mustard | nucleus | 79.73 | 76.62 |
| CDY06137 | Canola | nucleus | 79.73 | 76.62 |
| AT2G41340.1 | Thale cress | nucleus | 66.22 | 67.43 |
| PGSC0003DMT400057891 | Potato | nucleus | 28.38 | 63.64 |
| VIT_08s0007g05540.t01 | Wine grape | nucleus | 60.81 | 58.95 |
| KRG95122 | Soybean | nucleus | 53.15 | 57.56 |
| GSMUA_Achr9P19340_001 | Banana | nucleus | 25.68 | 57.0 |
| Solyc04g040170.2.1 | Tomato | nucleus | 58.11 | 56.83 |
| PGSC0003DMT400027609 | Potato | cytosol | 57.66 | 56.39 |
| KRH66799 | Soybean | nucleus | 59.01 | 55.51 |
| Solyc01g098320.2.1 | Tomato | nucleus | 53.6 | 52.42 |
| Os12t0139500-01 | Rice | nucleus | 45.05 | 44.05 |
| AT3G54490.1 | Thale cress | nucleus | 45.05 | 42.92 |
| TraesCS5A01G131700.1 | Wheat | nucleus | 43.24 | 42.48 |
| TraesCS5B01G132800.1 | Wheat | nucleus | 42.34 | 41.59 |
| TraesCS5D01G140300.1 | Wheat | nucleus | 41.44 | 40.71 |
| HORVU5Hr1G043080.6 | Barley | nucleus | 41.44 | 40.35 |
| TraesCS4B01G133200.1 | Wheat | nucleus | 44.59 | 39.29 |
| TraesCS4D01G128200.1 | Wheat | nucleus | 44.59 | 39.29 |
| TraesCS4A01G185400.1 | Wheat | nucleus | 44.59 | 39.29 |
| KXG22818 | Sorghum | mitochondrion | 19.37 | 39.09 |
| EES09238 | Sorghum | nucleus | 45.5 | 38.4 |
| HORVU0Hr1G038750.1 | Barley | nucleus | 44.59 | 36.67 |
| AT3G22320.1 | Thale cress | nucleus | 32.43 | 35.12 |
| Os11t0143400-00 | Rice | nucleus | 45.05 | 29.76 |
| AT5G57980.1 | Thale cress | nucleus | 27.93 | 29.52 |
| AT3G16680.1 | Thale cress | golgi | 10.36 | 26.44 |
Protein Annotations
| MapMan:15.1.6.3 | Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | EntrezGene:824875 | ProteinID:AEE79612.1 | EMBL:AK118958 |
| ArrayExpress:AT3G57080 | EnsemblPlantsGene:AT3G57080 | RefSeq:AT3G57080 | TAIR:AT3G57080 | RefSeq:AT3G57080-TAIR-G | EnsemblPlants:AT3G57080.1 |
| TAIR:AT3G57080.1 | EMBL:BT005410 | ProteinID:CAB72178.1 | InterPro:DNA_RNA_pol_RPB5_euk/virus | GO:GO:0000419 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR035913 |
| InterPro:IPR036710 | RefSeq:NP_191267.1 | PFAM:PD005155 | PFAM:PF01191 | PFAM:PF03871 | PIRSF:PIRSF000747 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR10535 |
| PANTHER:PTHR10535:SF2 | UniProt:Q9M1J2 | InterPro:RNA_pol_Rpb5_N | InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C | InterPro:RPB5-like |
| Symbol:RPB5B | SUPFAM:SSF53036 | SUPFAM:SSF55287 | UniParc:UPI000000C63B | : | : |
Description
NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
Coordinates
chr3:+:21125725..21128075
Molecular Weight (calculated)
25587.0 Da
IEP (calculated)
9.458
GRAVY (calculated)
-0.286
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.