Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G128200.1 | Wheat | nucleus | 97.62 | 97.62 |
| TraesCS4B01G133200.1 | Wheat | nucleus | 97.22 | 97.22 |
| HORVU0Hr1G038750.1 | Barley | nucleus | 85.32 | 79.63 |
| TraesCS5A01G131700.1 | Wheat | nucleus | 67.06 | 74.78 |
| GSMUA_Achr9P19340_001 | Banana | nucleus | 26.98 | 68.0 |
| EES09238 | Sorghum | nucleus | 68.65 | 65.78 |
| PGSC0003DMT400057891 | Potato | nucleus | 23.41 | 59.6 |
| VIT_08s0007g05540.t01 | Wine grape | nucleus | 44.44 | 48.91 |
| Solyc04g040170.2.1 | Tomato | nucleus | 43.65 | 48.46 |
| PGSC0003DMT400027609 | Potato | cytosol | 43.65 | 48.46 |
| KRG95122 | Soybean | nucleus | 38.49 | 47.32 |
| Solyc01g098320.2.1 | Tomato | nucleus | 42.46 | 47.14 |
| KRH66799 | Soybean | nucleus | 44.05 | 47.03 |
| VIT_13s0139g00310.t01 | Wine grape | nucleus | 40.08 | 45.7 |
| CDY14763 | Canola | nucleus | 39.68 | 44.84 |
| AT3G57080.1 | Thale cress | nucleus | 39.29 | 44.59 |
| Bra016940.1-P | Field mustard | nucleus | 39.29 | 44.39 |
| Bra007300.1-P | Field mustard | nucleus | 40.48 | 44.16 |
| CDY06137 | Canola | nucleus | 40.48 | 44.16 |
| CDY06931 | Canola | nucleus | 38.89 | 43.95 |
| CDX72073 | Canola | nucleus | 40.08 | 43.91 |
| AT2G41340.1 | Thale cress | nucleus | 37.3 | 43.12 |
| KRH62911 | Soybean | nucleus | 30.56 | 42.08 |
| AT3G54490.1 | Thale cress | nucleus | 38.49 | 41.63 |
| Bra014812.1-P | Field mustard | nucleus | 38.49 | 41.28 |
| CDY13211 | Canola | nucleus | 38.89 | 39.84 |
| CDX76143 | Canola | cytosol | 38.49 | 38.65 |
| KRH30040 | Soybean | nucleus | 36.11 | 38.56 |
| TraesCS2A01G346100.2 | Wheat | nucleus | 30.95 | 38.24 |
| TraesCS3A01G333200.2 | Wheat | nucleus | 30.16 | 36.19 |
| TraesCS2A01G346300.1 | Wheat | nucleus | 28.97 | 35.61 |
| TraesCS2A01G346200.1 | Wheat | nucleus | 28.17 | 33.97 |
Protein Annotations
| MapMan:15.1.6.3 | Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | InterPro:DNA_RNA_pol_RPB5_euk/virus | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR035913 | InterPro:IPR036710 | PFAM:PD005155 |
| PFAM:PF01191 | PFAM:PF03871 | PIRSF:PIRSF000747 | PANTHER:PTHR10535 | PANTHER:PTHR10535:SF2 | InterPro:RNA_pol_Rpb5_N |
| InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C | InterPro:RPB5-like | SUPFAM:SSF53036 | SUPFAM:SSF55287 | EnsemblPlantsGene:TraesCS4A01G185400 |
| EnsemblPlants:TraesCS4A01G185400.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:464767703..464771611
Molecular Weight (calculated)
28348.1 Da
IEP (calculated)
6.152
GRAVY (calculated)
-0.127
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQFAPQQSS LAMDSGESSA ASNAAHAAMA VDYAPEVACC VSSMVDLGGA AGVESQRLFL ARRTALEMLR DRGYSVPEDE LARTLPEFRA WWSETPEIER
101: LSFSTTLASD ESNKVRIVFC PPEPVKIAAI REVYLRIKEE NLSCLILILQ SKITSRARES IKEMFKFKVD VFQITELLVN ITKHVLKPKH EVLTAEEKAK
201: LLKQYNVVDS QLPRMLETDA VARYYGLGKG NVVKFTYDSE LTVDHVTYRC IF
101: LSFSTTLASD ESNKVRIVFC PPEPVKIAAI REVYLRIKEE NLSCLILILQ SKITSRARES IKEMFKFKVD VFQITELLVN ITKHVLKPKH EVLTAEEKAK
201: LLKQYNVVDS QLPRMLETDA VARYYGLGKG NVVKFTYDSE LTVDHVTYRC IF
001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW
Arabidopsis Description
NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.