CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014812.1-P	Field mustard	nucleus	94.31	98.72
CDX76143	Canola	cytosol	93.9	92.03
AT3G54490.1	Thale cress	nucleus	69.11	72.96
KRH62911	Soybean	nucleus	38.21	51.37
VIT_13s0139g00310.t01	Wine grape	nucleus	43.9	48.87
KRH30040	Soybean	nucleus	45.12	47.03
GSMUA_Achr9P19340_001	Banana	nucleus	19.11	47.0
Os12t0139500-01	Rice	nucleus	41.87	45.37
CDY06137	Canola	nucleus	41.06	43.72
CDY06931	Canola	nucleus	39.43	43.5
CDX72073	Canola	nucleus	40.65	43.48
CDY14763	Canola	nucleus	39.02	43.05
TraesCS5B01G132800.1	Wheat	nucleus	38.62	42.04
TraesCS5A01G131700.1	Wheat	nucleus	38.62	42.04
KXG22818	Sorghum	mitochondrion	18.7	41.82
HORVU5Hr1G043080.6	Barley	nucleus	37.8	40.79
TraesCS5D01G140300.1	Wheat	nucleus	37.4	40.71
EES09238	Sorghum	nucleus	42.28	39.54
TraesCS4B01G133200.1	Wheat	nucleus	40.24	39.29
TraesCS4D01G128200.1	Wheat	nucleus	40.24	39.29
TraesCS4A01G185400.1	Wheat	nucleus	39.84	38.89
HORVU0Hr1G038750.1	Barley	nucleus	40.65	37.04
CDY35542	Canola	nucleus	27.64	33.01
CDY24303	Canola	nucleus	27.64	33.01
CDX92939	Canola	nucleus	27.64	33.01
CDY10635	Canola	nucleus	27.24	32.52
CDY37407	Canola	nucleus	26.83	32.04
Os11t0143400-00	Rice	nucleus	41.87	30.65
CDY11839	Canola	nucleus	24.8	29.05
CDX88871	Canola	nucleus	24.8	28.77
CDX88650	Canola	nucleus	24.39	28.57
CDX70895	Canola	nucleus	23.98	28.37

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	GO:A0A078FJ57	UniProt:A0A078FJ57	EnsemblPlants:CDY13211
ProteinID:CDY13211	ProteinID:CDY13211.1	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00071105001	InterPro:IPR035913
InterPro:IPR036710	PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535
PANTHER:PTHR10535:SF6	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF53036
SUPFAM:SSF55287	TMHMM:TMhelix	UniParc:UPI0004EDB7C4	SEG:seg	:	:

Description

BnaC04g26240DBnaC04g26240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJ57]

Coordinates

chrLK032032:+:487736..489493

Molecular Weight (calculated)

27534.6 Da

IEP (calculated)

8.473

GRAVY (calculated)

-0.146

Length

246 amino acids

Sequence
(BLAST)

001: MEEVMAIERS SENGVSTFDD GAHSHCIAKT EDKGGVESKR FYLARTTALE MLRDRGYQVS DAELSLSLSE FRSGFGEKPD LERLRISVPL RSNPMKKAST
101: FLIMGLLLIL VVFMGSEPVT VKTVRAIHSQ VSSTVGLHGL ILVLQSKMNH FAKKELATFP CTVETFPIGD LLVNITKHTG QPKIEILTKE EKETLLSEHA
201: LEDKQLPLLK EKDSFVRYHG LKKGQVVKIT YSKEPVGHFV TYRCIV

Best Arabidopsis Sequence Match ( AT3G54490.1 )
(BLAST)

001: MEETMAEEGC CENVESTFDD GTNCISKTED TGGIESKRFY LARTTAFEML RDRGYEVNEA ELSLTLSEFR SVFGEKPELE RLRICVPLRS DPKKKILVVF
101: MGTEPITVKS VRALHIQISN NVGLHAMILV LQSKMNHFAQ KALTTFPFTV ETFPIEDLLV NITKHIQQPK IEILNKEEKE QLLRKHALED KQLPYLQEKD
201: SFVRYYGLKK KQVVKITYSK EPVGDFVTYR CII

Arabidopsis Description

NRPE5CDNA-directed RNA polymerase V subunit 5C [Source:UniProtKB/Swiss-Prot;Acc:Q9M1H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.