Factsheet for Os11t0143400-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0139500-01	Rice	nucleus	67.26	99.56
HORVU5Hr1G043080.6	Barley	nucleus	45.54	67.11
TraesCS5A01G131700.1	Wheat	nucleus	44.94	66.81
TraesCS5B01G132800.1	Wheat	nucleus	44.64	66.37
GSMUA_Achr9P19340_001	Banana	nucleus	19.64	66.0
TraesCS5D01G140300.1	Wheat	nucleus	43.75	65.04
PGSC0003DMT400057891	Potato	nucleus	17.26	58.59
KXG22818	Sorghum	mitochondrion	17.56	53.64
VIT_08s0007g05540.t01	Wine grape	nucleus	35.12	51.53
Solyc04g040170.2.1	Tomato	nucleus	34.23	50.66
PGSC0003DMT400027609	Potato	cytosol	34.23	50.66
Solyc01g098320.2.1	Tomato	nucleus	33.04	48.9
KRG95122	Soybean	nucleus	29.76	48.78
VIT_13s0139g00310.t01	Wine grape	nucleus	31.25	47.51
KRH66799	Soybean	nucleus	33.33	47.46
AT3G57080.1	Thale cress	nucleus	29.76	45.05
CDY06137	Canola	nucleus	30.95	45.02
Bra007300.1-P	Field mustard	nucleus	30.95	45.02
CDY06931	Canola	nucleus	29.76	44.84
Bra016940.1-P	Field mustard	nucleus	29.76	44.84
CDX72073	Canola	nucleus	30.65	44.78
CDY14763	Canola	nucleus	29.46	44.39
AT2G41340.1	Thale cress	nucleus	28.27	43.58
Bra014812.1-P	Field mustard	nucleus	30.36	43.4
KRH62911	Soybean	nucleus	23.21	42.62
AT3G54490.1	Thale cress	nucleus	29.46	42.49
KRH30040	Soybean	nucleus	29.46	41.95
CDY13211	Canola	nucleus	30.65	41.87
CDX76143	Canola	cytosol	30.36	40.64
Os01t0805800-01	Rice	nucleus	23.51	37.62
Os04t0487300-01	Rice	nucleus	16.37	32.93

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	EntrezGene:4349748	UniProt:A0A0P0XYM3	ProteinID:BAT12638.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913
InterPro:IPR036710	EnsemblPlantsGene:Os11g0143400	EnsemblPlants:Os11t0143400-00	PFAM:PD005155	PFAM:PF01191	PFAM:PF03871
PANTHER:PTHR10535	PANTHER:PTHR10535:SF2	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like
SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI000393A4C2	RefSeq:XP_015616663.1	SEG:seg	:

Description

DNA-directed RNA polymerase, RPB5 subunit domain containing protein. (Os11t0143400-00)

Coordinates

chr11:-:2015315..2018150

Molecular Weight (calculated)

36554.7 Da

IEP (calculated)

6.006

GRAVY (calculated)

-0.171

Length

336 amino acids

Sequence
(BLAST)

001: MSHSSPYQQS FTTIESAESA TAATSIETAE STTAARDVSP PPAAAPAARD VSPPAAASAA RDVSPPPAAA RDVSPPSAAH DVSPPAAVSA PPPAVVPAAA
101: RDAPPPAVAM AAEMEVDDVD VHEVPECIAS MIDRGSVESH RLFLARRTAM EMLRDRGYSV PEAEIARTLP EFRAWWAEKP GIERLAFTTT LVSDPSKKVQ
201: LVFCPPEPVK IATIREIYLQ TKEENLSRLV LILQSKILSR AREAIKEIFK FKVDIFQATD LLVNITKHVL KPKHEVLSAD QKAKLLKEYN VEDSQLPRML
301: ETDAVARYYG FDKGTVVKVI YDGELTGKRV AYRCVF

Best Arabidopsis Sequence Match ( AT3G57080.1 )
(BLAST)

001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW

Arabidopsis Description

NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.