Factsheet for Os01t0805800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 18022940
nucleus: 19621931

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0911700-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22320.1	Os01t0911700-02	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012557_P001	Maize	extracellular	93.33	93.33
KXG33574	Sorghum	nucleus	91.43	91.43
TraesCS3D01G326800.2	Wheat	nucleus	89.05	89.05
TraesCS3B01G363400.1	Wheat	nucleus	89.05	89.05
TraesCS3A01G333200.2	Wheat	nucleus	89.05	89.05
HORVU3Hr1G078930.1	Barley	nucleus	88.57	88.57
GSMUA_Achr2P00920_001	Banana	nucleus	78.57	80.88
Solyc03g025570.2.1	Tomato	cytosol	40.95	73.5
Solyc05g051790.2.1	Tomato	nucleus	62.86	70.21
KRH48354	Soybean	nucleus	67.62	68.93
VIT_11s0016g03530.t01	Wine grape	nucleus	67.62	68.93
KRH39324	Soybean	nucleus	67.14	68.45
AT3G22320.1	Thale cress	nucleus	66.19	67.8
Bra001864.1-P	Field mustard	nucleus	65.71	66.99
CDY35542	Canola	nucleus	65.71	66.99
CDY24303	Canola	nucleus	65.71	66.99
CDX92939	Canola	nucleus	65.71	66.99
PGSC0003DMT400051454	Potato	nucleus	65.24	66.5
PGSC0003DMT400077392	Potato	nucleus	64.29	65.53
CDY10635	Canola	nucleus	63.81	65.05
Bra031350.1-P	Field mustard	nucleus	63.81	65.05
CDY37407	Canola	nucleus	63.33	64.56
Solyc05g053510.1.1	Tomato	nucleus	58.1	58.94
PGSC0003DMT400069997	Potato	nucleus	57.14	57.97
Os04t0487300-01	Rice	nucleus	45.24	56.89
Bra006521.1-P	Field mustard	nucleus	51.9	54.77
CDX88871	Canola	nucleus	51.9	51.42
CDX70895	Canola	nucleus	50.0	50.48
AT3G16680.1	Thale cress	golgi	20.0	48.28
Bra006791.1-P	Field mustard	nucleus	43.81	43.81
CDY11839	Canola	nucleus	43.81	43.81
CDX88650	Canola	nucleus	43.81	43.81
AT5G57980.1	Thale cress	nucleus	43.33	43.33
Os12t0139500-01	Rice	nucleus	37.14	34.36
Os11t0143400-00	Rice	nucleus	37.62	23.51

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	EntrezGene:4327549	EMBL:AK059963	EMBL:AK103408
ProteinID:BAD68174.1	ProteinID:BAF06478.1	ProteinID:BAS74832.1	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0001054	GO:GO:0001055
GO:GO:0001056	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005665	GO:GO:0005666	GO:GO:0005730	GO:GO:0005736	GO:GO:0006139	GO:GO:0006351
GO:GO:0006360	GO:GO:0006366	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	HAMAP:MF_00025	EnsemblPlantsGene:Os01g0805800
EnsemblPlants:Os01t0805800-01	PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	ScanProsite:PS01110
PANTHER:PTHR10535	UniProt:Q5VQW7	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RNA_pol_subH/Rpb5_CS
InterPro:RPB5-like	InterPro:RpoH/RPB5	SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI0000457DB3	RefSeq:XP_015649715.1

Description

DNA-directed RNA polymerase, RPB5 subunit domain containing protein. (Os01t0805800-01);DNA-directed RNA polymerase, RPB5 subunit domain containing protein. (Os01t0805800-02)

Coordinates

chr1:-:34163747..34166383

Molecular Weight (calculated)

24907.6 Da

IEP (calculated)

9.907

GRAVY (calculated)

-0.415

Length

210 amino acids

Sequence
(BLAST)

001: MSAGLVTEEV MVGRLVRIRR TVMQMLRDRG YLVVEHELAM GRRDFLRKYG ESFHREDLLI NKYKKNDPSD QIYVFFPNDD KVGMKHIKKY VEMMKAENVS
101: RAVLVLQQNL TPFARSFLQE LEPKIHLEIF QEAELLINIK EHVLVPEHQV LNNEEKKTLL ERYTLKETQL PRIQITDPIA RYYGLRRGQV VKIIRPSETA
201: GRYVTYRYVV

Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Arabidopsis Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.