Factsheet for Bra006791.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88650	Canola	nucleus	100.0	100.0
AT5G57980.1	Thale cress	nucleus	81.9	81.9
GSMUA_Achr2P00920_001	Banana	nucleus	45.24	46.57
KXG33574	Sorghum	nucleus	46.19	46.19
Bra031350.1-P	Field mustard	nucleus	44.76	45.63
GSMUA_AchrUn_...	Banana	nucleus	44.29	44.93
TraesCS2D01G345000.2	Wheat	nucleus	43.81	44.88
Bra001864.1-P	Field mustard	nucleus	43.81	44.66
Zm00001d003242_P001	Maize	mitochondrion	43.81	44.66
TraesCS2B01G364700.1	Wheat	nucleus, plastid	43.33	44.39
Zm00001d012557_P001	Maize	extracellular	44.29	44.29
TraesCS3D01G326800.2	Wheat	nucleus	44.29	44.29
TraesCS3B01G363400.1	Wheat	nucleus	44.29	44.29
TraesCS3A01G333200.2	Wheat	nucleus	44.29	44.29
HORVU3Hr1G078930.1	Barley	nucleus	44.29	44.29
KXG26596	Sorghum	nucleus	43.33	44.17
TraesCS2A01G346300.1	Wheat	nucleus	42.86	43.9
Os01t0805800-01	Rice	nucleus	43.81	43.81
TraesCS2D01G344900.1	Wheat	nucleus	42.86	43.06
TraesCS2B01G364600.1	Wheat	nucleus, plastid	42.86	43.06
HORVU2Hr1G084270.1	Barley	nucleus	41.43	42.65
TraesCS2A01G346100.2	Wheat	nucleus	41.43	42.65
TraesCS2A01G346200.1	Wheat	nucleus	42.38	42.58
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	40.48	41.67
Os04t0487300-01	Rice	nucleus	32.86	41.32
TraesCS2B01G364500.1	Wheat	nucleus	40.0	41.18
Bra006521.1-P	Field mustard	nucleus	37.14	39.2
HORVU1Hr1G048500.1	Barley	endoplasmic reticulum	8.1	34.69
HORVU6Hr1G071230.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	16.19	34.0
HORVU2Hr1G084300.6	Barley	nucleus, plastid	44.29	33.7
HORVU4Hr1G028860.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	17.14	32.14
HORVU1Hr1G052270.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.14	32.14
HORVU7Hr1G020400.1	Barley	cytosol, mitochondrion, nucleus, plastid	16.67	31.25
HORVU2Hr1G026650.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	16.19	30.36
Bra016940.1-P	Field mustard	nucleus	30.48	28.7
Bra007300.1-P	Field mustard	nucleus	30.48	27.71
Bra014812.1-P	Field mustard	nucleus	28.1	25.11
HORVU6Hr1G011700.1	Barley	endoplasmic reticulum, nucleus	20.48	23.63

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	EnsemblPlantsGene:Bra006791	EnsemblPlants:Bra006791.1	EnsemblPlants:Bra006791.1-P
InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
InterPro:IPR035913	InterPro:IPR036710	UniProt:M4CRF0	PFAM:PD005155	PFAM:PF01191	PFAM:PF03871
PIRSF:PIRSF000747	PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like
SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI0002540384	SEG:seg	:	:

Description

AT5G57980 (E=1e-090) RPB5C | RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C); DNA binding / DNA-directed RNA polymerase

Coordinates

chrA03:+:5062545..5063249

Molecular Weight (calculated)

24312.6 Da

IEP (calculated)

9.296

GRAVY (calculated)

-0.410

Length

210 amino acids

Sequence
(BLAST)

001: MSEGEDEITR VFKVRRTVLQ MLKDRGYNIE ESDIELKRED FVQNFCKAMN KVNKEALFVT ADKGPNPEDK IYVFYPEGPK VGVPIIKKDV VMKMRDDKVT
101: RGIIVVPQPI TGAAKNAIIE LNKILTIEVF EEAELVTNIT EHKLINKYYV LDNQAKKELL QKYTVQDTQL PRILVSDPVA RYYGLKRGQV VKIRRTDATS
201: LDYYTYRYAV

Best Arabidopsis Sequence Match ( AT5G57980.1 )
(BLAST)

001: MSDMDDEITR IFKVRRTVLQ MLRDRGYTIE ESDLNLKREE FVQRFCKTMN KVNKEALFVS ANKGPNPADK IYVFYPEGPK VGVPVIKKEV AIKMRDDKVH
101: RGIVVVPMAI TAPARMAVSE LNKMLTIEVF EEAELVTNIT EHKLVNKYYV LDDQAKKKLL NTYTVQDTQL PRILVTDPLA RYYGLKRGQV VKIRRSDATS
201: LDYYTYRFAV

Arabidopsis Description

NRPB5L1DNA-directed RNA polymerase subunit 5-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJL8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.