Factsheet for HORVU7Hr1G020400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol, nucleus, mitochondrion

Predictor Summary:

mitochondrion 2
nucleus 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G092690.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22320.1	HORVU3Hr1G092690.2	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G071230.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	85.71	96.0
HORVU1Hr1G052270.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	92.86	92.86
HORVU4Hr1G028860.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	91.96	91.96
HORVU2Hr1G026650.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	91.96	91.96
HORVU1Hr1G048500.1	Barley	endoplasmic reticulum	39.29	89.8
HORVU6Hr1G011700.1	Barley	endoplasmic reticulum, nucleus	61.61	37.91
Solyc03g025570.2.1	Tomato	cytosol	39.29	37.61
AT3G16680.1	Thale cress	golgi	27.68	35.63
TraesCS2A01G346200.1	Wheat	nucleus	62.5	33.49
TraesCS2D01G344900.1	Wheat	nucleus	62.5	33.49
TraesCS2B01G364600.1	Wheat	nucleus, plastid	62.5	33.49
Os04t0487300-01	Rice	nucleus	45.54	30.54
Zm00001d003242_P001	Maize	mitochondrion	51.79	28.16
KXG26596	Sorghum	nucleus	50.89	27.67
Solyc05g051790.2.1	Tomato	nucleus	44.64	26.6
GSMUA_AchrUn_...	Banana	nucleus	49.11	26.57
CDY10635	Canola	nucleus	47.32	25.73
CDY37407	Canola	nucleus	47.32	25.73
Bra031350.1-P	Field mustard	nucleus	47.32	25.73
CDX92939	Canola	nucleus	46.43	25.24
CDY24303	Canola	nucleus	46.43	25.24
CDY35542	Canola	nucleus	46.43	25.24
VIT_11s0016g03530.t01	Wine grape	nucleus	46.43	25.24
Bra001864.1-P	Field mustard	nucleus	46.43	25.24
AT3G22320.1	Thale cress	nucleus	45.54	24.88
KRH39324	Soybean	nucleus	45.54	24.76
KRH48354	Soybean	nucleus	45.54	24.76
HORVU2Hr1G084300.6	Barley	nucleus, plastid	60.71	24.64
HORVU2Hr1G084270.1	Barley	nucleus	44.64	24.51
PGSC0003DMT400077392	Potato	nucleus	43.75	23.79
PGSC0003DMT400051454	Potato	nucleus	43.75	23.79
Solyc05g053510.1.1	Tomato	nucleus	43.75	23.67
HORVU3Hr1G078930.1	Barley	nucleus	43.75	23.33
PGSC0003DMT400069997	Potato	nucleus	40.18	21.74
Bra006521.1-P	Field mustard	nucleus	36.61	20.6
CDX70895	Canola	nucleus	35.71	19.23
CDX88871	Canola	nucleus	35.71	18.87
AT5G57980.1	Thale cress	nucleus	32.14	17.14
CDY11839	Canola	nucleus	31.25	16.67
CDX88650	Canola	nucleus	31.25	16.67
Bra006791.1-P	Field mustard	nucleus	31.25	16.67
HORVU5Hr1G043080.6	Barley	nucleus	27.68	13.6
HORVU0Hr1G038750.1	Barley	nucleus	30.36	12.59

Protein Annotations

Gene3D:3.40.1340.10	Gene3D:3.90.940.20	MapMan:35.2	UniProt:A0A287VM05	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:HORVU7Hr1G020400	EnsemblPlants:HORVU7Hr1G020400.1	InterPro:IPR035913
InterPro:IPR036710	PFAM:PF01191	PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like
SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI000B484A82	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr7H:-:27697606..27698575

Molecular Weight (calculated)

12829.7 Da

IEP (calculated)

8.226

GRAVY (calculated)

-0.257

Length

112 amino acids

Sequence
(BLAST)

001: MKQENVYNGV LVMQQALTAF SRNLMLGLSQ EKLQLEVFQE GELLINIKNH DLVPEHVLLT KEQKKTLLEK YTLKETQVIQ ICEPFAHYGS VGRKHIINLK
101: EKAPSTSSSY IC

Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Arabidopsis Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.