Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G22320.1 | CDX93029 | AT3G24650.1 | 10743655 |
| AT3G22320.1 | CDY15121 | AT3G24650.1 | 10743655 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031350.1-P | Field mustard | nucleus | 98.06 | 98.06 |
| CDY10635 | Canola | nucleus | 97.57 | 97.57 |
| CDX92939 | Canola | nucleus | 94.66 | 94.66 |
| CDY24303 | Canola | nucleus | 94.66 | 94.66 |
| CDY35542 | Canola | nucleus | 94.66 | 94.66 |
| AT3G22320.1 | Thale cress | nucleus | 90.29 | 90.73 |
| VIT_11s0016g03530.t01 | Wine grape | nucleus | 82.04 | 82.04 |
| Solyc03g025570.2.1 | Tomato | cytosol | 45.15 | 79.49 |
| Solyc05g051790.2.1 | Tomato | nucleus | 70.87 | 77.66 |
| KRH48354 | Soybean | nucleus | 76.21 | 76.21 |
| KRH39324 | Soybean | nucleus | 76.21 | 76.21 |
| PGSC0003DMT400051454 | Potato | nucleus | 75.73 | 75.73 |
| PGSC0003DMT400077392 | Potato | nucleus | 74.76 | 74.76 |
| GSMUA_AchrUn_... | Banana | nucleus | 69.9 | 69.57 |
| GSMUA_Achr2P00920_001 | Banana | nucleus | 66.5 | 67.16 |
| Zm00001d012557_P001 | Maize | extracellular | 65.05 | 63.81 |
| Os01t0805800-01 | Rice | nucleus | 64.56 | 63.33 |
| KXG33574 | Sorghum | nucleus | 63.59 | 62.38 |
| TraesCS3D01G326800.2 | Wheat | nucleus | 63.11 | 61.9 |
| TraesCS3B01G363400.1 | Wheat | nucleus | 63.11 | 61.9 |
| TraesCS3A01G333200.2 | Wheat | nucleus | 63.11 | 61.9 |
| HORVU3Hr1G078930.1 | Barley | nucleus | 63.11 | 61.9 |
| Solyc05g053510.1.1 | Tomato | nucleus | 60.68 | 60.39 |
| TraesCS2D01G345000.2 | Wheat | nucleus | 59.71 | 60.0 |
| TraesCS2A01G346300.1 | Wheat | nucleus | 59.71 | 60.0 |
| TraesCS2D01G344900.1 | Wheat | nucleus | 60.68 | 59.81 |
| TraesCS2B01G364600.1 | Wheat | nucleus, plastid | 60.68 | 59.81 |
| Zm00001d003242_P001 | Maize | mitochondrion | 59.71 | 59.71 |
| TraesCS2A01G346200.1 | Wheat | nucleus | 60.19 | 59.33 |
| PGSC0003DMT400069997 | Potato | nucleus | 59.22 | 58.94 |
| KXG26596 | Sorghum | nucleus | 58.74 | 58.74 |
| TraesCS2B01G364700.1 | Wheat | nucleus, plastid | 58.25 | 58.54 |
| CDX70895 | Canola | nucleus | 56.31 | 55.77 |
| Os04t0487300-01 | Rice | nucleus | 44.17 | 54.49 |
| CDX88871 | Canola | nucleus | 55.83 | 54.25 |
| HORVU1Hr1G048500.1 | Barley | endoplasmic reticulum | 12.62 | 53.06 |
| TraesCS2D01G344800.1 | Wheat | mitochondrion, nucleus | 50.97 | 51.47 |
| TraesCS2A01G346100.2 | Wheat | nucleus | 50.97 | 51.47 |
| HORVU6Hr1G071230.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 24.76 | 51.0 |
| HORVU2Hr1G084270.1 | Barley | nucleus | 50.49 | 50.98 |
| TraesCS2B01G364500.1 | Wheat | nucleus | 50.49 | 50.98 |
| HORVU7Hr1G020400.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 25.73 | 47.32 |
| HORVU1Hr1G052270.3 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 25.73 | 47.32 |
| HORVU4Hr1G028860.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 25.24 | 46.43 |
| HORVU2Hr1G026650.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 24.76 | 45.54 |
| CDY11839 | Canola | nucleus | 45.15 | 44.29 |
| CDX88650 | Canola | nucleus | 45.15 | 44.29 |
| HORVU2Hr1G084300.6 | Barley | nucleus, plastid | 58.25 | 43.48 |
| HORVU6Hr1G011700.1 | Barley | endoplasmic reticulum, nucleus | 33.5 | 37.91 |
| CDY06137 | Canola | nucleus | 34.95 | 31.17 |
| CDX72073 | Canola | nucleus | 34.47 | 30.87 |
| CDY14763 | Canola | nucleus | 32.52 | 30.04 |
| CDY06931 | Canola | nucleus | 31.55 | 29.15 |
| CDY13211 | Canola | nucleus | 32.04 | 26.83 |
| CDX76143 | Canola | cytosol | 31.55 | 25.9 |
Protein Annotations
| MapMan:15.1.6.3 | Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | GO:A0A078HHR6 | UniProt:A0A078HHR6 | EnsemblPlants:CDY37407 |
| ProteinID:CDY37407 | ProteinID:CDY37407.1 | InterPro:DNA_RNA_pol_RPB5_euk/virus | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00063980001 | InterPro:IPR035913 | InterPro:IPR036710 | HAMAP:MF_00025 |
| PFAM:PD005155 | PFAM:PF01191 | PFAM:PF03871 | PIRSF:PIRSF000747 | ScanProsite:PS01110 | PANTHER:PTHR10535 |
| InterPro:RNA_pol_Rpb5_N | InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C | InterPro:RNA_pol_subH/Rpb5_CS | InterPro:RPB5-like | InterPro:RpoH/RPB5 |
| SUPFAM:SSF53036 | SUPFAM:SSF55287 | UniParc:UPI0004EBDA4A | : | : | : |
Description
BnaC05g30230DBnaC05g30230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHR6]
Coordinates
chrLK032399:-:301736..303080
Molecular Weight (calculated)
24244.6 Da
IEP (calculated)
9.940
GRAVY (calculated)
-0.422
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLTEEEIKR IYRIQKTLMQ MLKDRGYFIA DSEITMTLSQ FVRKHGDNMK REDLVTLRAK RNDSSDQLYV FFPDEVKVGI NTMKVYTNRM KSENVYRAIL
101: VVQQNLTPFA RNCISQISSK FHLEVFQEAE MLVNIKEHVL VPEHQVLTTE EKKTLLERYT VKETQLPRIQ VTDPIARYFG LKRGQVVKII RPSETAGRYV
201: TYRYAV
101: VVQQNLTPFA RNCISQISSK FHLEVFQEAE MLVNIKEHVL VPEHQVLTTE EKKTLLERYT VKETQLPRIQ VTDPIARYFG LKRGQVVKII RPSETAGRYV
201: TYRYAV
001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV
Arabidopsis Description
NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.