Factsheet for Solyc05g051790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g083590.2.1
Solyc06g083600.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22320.1	Solyc06g083590.2.1	AT3G24650.1	10743655
AT3G22320.1	Solyc06g083600.1.1	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077392	Potato	nucleus	98.4	89.81
Solyc03g025570.2.1	Tomato	cytosol	54.79	88.03
VIT_11s0016g03530.t01	Wine grape	nucleus	86.17	78.64
Bra001864.1-P	Field mustard	nucleus	81.38	74.27
KRH48354	Soybean	nucleus	81.38	74.27
CDX92939	Canola	nucleus	81.38	74.27
CDY35542	Canola	nucleus	81.38	74.27
CDY24303	Canola	nucleus	81.38	74.27
KRH39324	Soybean	nucleus	80.85	73.79
AT3G22320.1	Thale cress	nucleus	80.32	73.66
Bra031350.1-P	Field mustard	nucleus	78.72	71.84
CDY37407	Canola	nucleus	77.66	70.87
CDY10635	Canola	nucleus	77.66	70.87
GSMUA_AchrUn_...	Banana	nucleus	75.0	68.12
GSMUA_Achr2P00920_001	Banana	nucleus	72.87	67.16
Solyc05g053510.1.1	Tomato	nucleus	71.81	65.22
Os01t0805800-01	Rice	nucleus	70.21	62.86
Zm00001d012557_P001	Maize	extracellular	69.68	62.38
Zm00001d003242_P001	Maize	mitochondrion	68.09	62.14
HORVU3Hr1G078930.1	Barley	nucleus	69.15	61.9
TraesCS3D01G326800.2	Wheat	nucleus	69.15	61.9
TraesCS3B01G363400.1	Wheat	nucleus	69.15	61.9
TraesCS3A01G333200.2	Wheat	nucleus	69.15	61.9
KXG33574	Sorghum	nucleus	68.09	60.95
KXG26596	Sorghum	nucleus	66.49	60.68
TraesCS2A01G346300.1	Wheat	nucleus	63.83	58.54
TraesCS2D01G345000.2	Wheat	nucleus	63.3	58.05
TraesCS2B01G364600.1	Wheat	nucleus, plastid	64.36	57.89
TraesCS2D01G344900.1	Wheat	nucleus	64.36	57.89
TraesCS2A01G346200.1	Wheat	nucleus	63.83	57.42
TraesCS2B01G364700.1	Wheat	nucleus, plastid	62.23	57.07
Os04t0487300-01	Rice	nucleus	46.81	52.69
Bra006521.1-P	Field mustard	nucleus	55.32	52.26
HORVU2Hr1G084270.1	Barley	nucleus	53.72	49.51
TraesCS2A01G346100.2	Wheat	nucleus	53.19	49.02
CDX88871	Canola	nucleus	54.79	48.58
CDX70895	Canola	nucleus	53.72	48.56
TraesCS2B01G364500.1	Wheat	nucleus	52.66	48.53
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	52.13	48.04
HORVU6Hr1G071230.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	25.53	48.0
HORVU1Hr1G048500.1	Barley	endoplasmic reticulum	12.23	46.94
AT3G16680.1	Thale cress	golgi	21.28	45.98
HORVU1Hr1G052270.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.6	44.64
HORVU7Hr1G020400.1	Barley	cytosol, mitochondrion, nucleus, plastid	26.6	44.64
HORVU4Hr1G028860.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	26.06	43.75
HORVU2Hr1G026650.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	25.53	42.86
HORVU2Hr1G084300.6	Barley	nucleus, plastid	61.17	41.67
HORVU6Hr1G011700.1	Barley	endoplasmic reticulum, nucleus	34.04	35.16
Solyc04g040170.2.1	Tomato	nucleus	36.7	30.4
Solyc01g098320.2.1	Tomato	nucleus	35.64	29.52

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0001054	GO:GO:0001055
GO:GO:0001056	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005665	GO:GO:0005666	GO:GO:0005730	GO:GO:0005736	GO:GO:0006139	GO:GO:0006351
GO:GO:0006360	GO:GO:0006366	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	UniProt:K4C1L0	HAMAP:MF_00025
PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N
InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	InterPro:RpoH/RPB5	SUPFAM:SSF53036	SUPFAM:SSF55287
EnsemblPlantsGene:Solyc05g051790.2	EnsemblPlants:Solyc05g051790.2.1	UniParc:UPI000276590B	:	:	:

Description

No Description!

Coordinates

chr5:+:62169727..62172681

Molecular Weight (calculated)

22197.1 Da

IEP (calculated)

9.561

GRAVY (calculated)

-0.481

Length

188 amino acids

Sequence
(BLAST)

001: MEMLSDRGYL VGDFEINMSK HQFLQKYGEN MKREDLVIQK AKRNNSSDQI YVFFPEEPKV GVKTMKTYTE RMKKEDVFQA ILIVQQNLTP FARTCISEIS
101: TKFHLEVFQE AEMLVNIKNH VLIPEHQLLS PEEKKTLLER YTVKETQLPR IQITDPIARY YGLKRGQVVK IIRPSETAGR YITYRYVV

Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Arabidopsis Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.