Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G092690.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G22320.1 | HORVU3Hr1G092690.2 | AT3G24650.1 | 10743655 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G048500.1 | Barley | endoplasmic reticulum | 23.63 | 87.76 |
| HORVU6Hr1G071230.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 37.91 | 69.0 |
| HORVU1Hr1G052270.3 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 37.91 | 61.61 |
| HORVU7Hr1G020400.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 37.91 | 61.61 |
| HORVU4Hr1G028860.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 37.91 | 61.61 |
| HORVU2Hr1G026650.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 37.36 | 60.71 |
| TraesCS2D01G344900.1 | Wheat | nucleus | 55.49 | 48.33 |
| TraesCS2B01G364600.1 | Wheat | nucleus, plastid | 55.49 | 48.33 |
| TraesCS2A01G346200.1 | Wheat | nucleus | 54.95 | 47.85 |
| Os04t0487300-01 | Rice | nucleus | 42.31 | 46.11 |
| AT3G16680.1 | Thale cress | golgi | 19.23 | 40.23 |
| Zm00001d003242_P001 | Maize | mitochondrion | 41.76 | 36.89 |
| KXG26596 | Sorghum | nucleus | 41.21 | 36.41 |
| HORVU2Hr1G084300.6 | Barley | nucleus, plastid | 53.3 | 35.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.01 | 34.3 |
| Solyc05g051790.2.1 | Tomato | nucleus | 35.16 | 34.04 |
| AT3G22320.1 | Thale cress | nucleus | 37.91 | 33.66 |
| CDY37407 | Canola | nucleus | 37.91 | 33.5 |
| CDY35542 | Canola | nucleus | 37.91 | 33.5 |
| CDY24303 | Canola | nucleus | 37.91 | 33.5 |
| Bra031350.1-P | Field mustard | nucleus | 37.91 | 33.5 |
| CDY10635 | Canola | nucleus | 37.91 | 33.5 |
| Bra001864.1-P | Field mustard | nucleus | 37.91 | 33.5 |
| CDX92939 | Canola | nucleus | 37.91 | 33.5 |
| KRH48354 | Soybean | nucleus | 37.36 | 33.01 |
| VIT_11s0016g03530.t01 | Wine grape | nucleus | 36.81 | 32.52 |
| KRH39324 | Soybean | nucleus | 36.81 | 32.52 |
| PGSC0003DMT400051454 | Potato | nucleus | 36.26 | 32.04 |
| PGSC0003DMT400077392 | Potato | nucleus | 35.71 | 31.55 |
| HORVU3Hr1G078930.1 | Barley | nucleus | 36.26 | 31.43 |
| Solyc03g025570.2.1 | Tomato | cytosol | 19.23 | 29.91 |
| Solyc05g053510.1.1 | Tomato | nucleus | 32.97 | 28.99 |
| HORVU2Hr1G084270.1 | Barley | nucleus | 32.42 | 28.92 |
| PGSC0003DMT400069997 | Potato | nucleus | 31.32 | 27.54 |
| Bra006521.1-P | Field mustard | nucleus | 28.02 | 25.63 |
| CDX88871 | Canola | nucleus | 28.57 | 24.53 |
| CDX70895 | Canola | nucleus | 28.02 | 24.52 |
| AT5G57980.1 | Thale cress | nucleus | 26.37 | 22.86 |
| CDY11839 | Canola | nucleus | 24.18 | 20.95 |
| Bra006791.1-P | Field mustard | nucleus | 23.63 | 20.48 |
| CDX88650 | Canola | nucleus | 23.63 | 20.48 |
| HORVU5Hr1G043080.6 | Barley | nucleus | 18.13 | 14.47 |
| HORVU0Hr1G038750.1 | Barley | nucleus | 20.88 | 14.07 |
Protein Annotations
| MapMan:15.1.6.3 | Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | UniProt:A0A287TBA4 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:HORVU6Hr1G011700 | EnsemblPlants:HORVU6Hr1G011700.1 | InterPro:IPR035913 |
| InterPro:IPR036710 | PFAM:PD005155 | PFAM:PF01191 | PANTHER:PTHR10535 | InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C |
| InterPro:RPB5-like | SUPFAM:SSF53036 | SUPFAM:SSF55287 | UniParc:UPI000B470F3F | SEG:seg | : |
Description
No Description!
Coordinates
chrchr6H:-:21555818..21556777
Molecular Weight (calculated)
21055.5 Da
IEP (calculated)
6.017
GRAVY (calculated)
-0.230
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: DKYGWDPDAK VWVWLLDAEV VLIGVVQHYE SHTLVCRGCT CTGLGGEYIR DWQDLPHLIN RAKKDKPDEQ IYIISLNEPK PGVKTVKSYA EKMKQENVYN
101: GILVVQQALT AFSRNLLLGL SQEKLQLEVF QEGELLINIK NHDLVPEHVL LTQEQKKTLF EKYIVKETQY TFMYIFQMAV LG
101: GILVVQQALT AFSRNLLLGL SQEKLQLEVF QEGELLINIK NHDLVPEHVL LTQEQKKTLF EKYIVKETQY TFMYIFQMAV LG
1: MKKYIDQLKS ANVFRAILVV QDIKAFSRQA LVFLGAVYPI FHIEVFQEKE LIVNVKEHVF VPEHQALTTE EKQKFLERKR TSFQGFT
Arabidopsis Description
DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4J2R9]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.