Factsheet for Zm00001d003242_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d042396_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22320.1	Zm00001d042396_P003	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26596	Sorghum	nucleus	85.44	85.44
Os04t0487300-01	Rice	nucleus	58.74	72.46
GSMUA_AchrUn_...	Banana	nucleus	72.33	71.98
Solyc03g025570.2.1	Tomato	cytosol	39.81	70.09
TraesCS2B01G364600.1	Wheat	nucleus, plastid	70.39	69.38
TraesCS2D01G344900.1	Wheat	nucleus	69.9	68.9
TraesCS2A01G346200.1	Wheat	nucleus	69.9	68.9
TraesCS2A01G346300.1	Wheat	nucleus	68.45	68.78
TraesCS2D01G345000.2	Wheat	nucleus	67.96	68.29
Solyc05g051790.2.1	Tomato	nucleus	62.14	68.09
TraesCS2B01G364700.1	Wheat	nucleus, plastid	67.48	67.8
VIT_11s0016g03530.t01	Wine grape	nucleus	66.5	66.5
PGSC0003DMT400077392	Potato	nucleus	66.5	66.5
PGSC0003DMT400051454	Potato	nucleus	65.05	65.05
CDX92939	Canola	nucleus	62.62	62.62
CDY35542	Canola	nucleus	62.62	62.62
CDY24303	Canola	nucleus	62.62	62.62
Bra001864.1-P	Field mustard	nucleus	62.62	62.62
AT3G22320.1	Thale cress	nucleus	62.14	62.44
KRH39324	Soybean	nucleus	61.65	61.65
KRH48354	Soybean	nucleus	61.65	61.65
TraesCS2A01G346100.2	Wheat	nucleus	60.68	61.27
TraesCS2B01G364500.1	Wheat	nucleus	60.68	61.27
Zm00001d012557_P001	Maize	extracellular	62.14	60.95
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	60.19	60.78
Bra031350.1-P	Field mustard	nucleus	60.68	60.68
CDY10635	Canola	nucleus	60.68	60.68
HORVU2Hr1G084270.1	Barley	nucleus	59.22	59.8
CDY37407	Canola	nucleus	59.71	59.71
HORVU1Hr1G048500.1	Barley	endoplasmic reticulum	13.59	57.14
HORVU6Hr1G071230.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	27.18	56.0
Solyc05g053510.1.1	Tomato	nucleus	55.34	55.07
PGSC0003DMT400069997	Potato	nucleus	54.85	54.59
HORVU7Hr1G020400.1	Barley	cytosol, mitochondrion, nucleus, plastid	28.16	51.79
HORVU1Hr1G052270.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	28.16	51.79
Bra006521.1-P	Field mustard	nucleus	49.51	51.26
HORVU4Hr1G028860.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	27.67	50.89
AT3G16680.1	Thale cress	golgi	21.36	50.57
HORVU2Hr1G026650.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	27.18	50.0
HORVU2Hr1G084300.6	Barley	nucleus, plastid	66.02	49.28
CDX88871	Canola	nucleus	50.49	49.06
CDX70895	Canola	nucleus	48.54	48.08
AT5G57980.1	Thale cress	nucleus	47.57	46.67
CDY11839	Canola	nucleus	44.66	43.81
CDX88650	Canola	nucleus	44.66	43.81
Bra006791.1-P	Field mustard	nucleus	44.66	43.81
HORVU6Hr1G011700.1	Barley	endoplasmic reticulum, nucleus	36.89	41.76

Protein Annotations

EntrezGene:100193880	MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	UniProt:B4FGM1	EMBL:BT036259
InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
InterPro:IPR035913	InterPro:IPR036710	HAMAP:MF_00025	ProteinID:ONM16497.1	PFAM:PD005155	PFAM:PF01191
PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C
InterPro:RPB5-like	InterPro:RpoH/RPB5	SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI000059038B	EnsemblPlantsGene:Zm00001d003242
EnsemblPlants:Zm00001d003242_P001	EnsemblPlants:Zm00001d003242_T001	:	:	:	:

Description

DNA-directed RNA polymerases II and IV subunit 5A

Coordinates

chr2:+:37432377..37436933

Molecular Weight (calculated)

24127.2 Da

IEP (calculated)

9.879

GRAVY (calculated)

-0.502

Length

206 amino acids

Sequence
(BLAST)

001: MASPDDEISR LFRIRRTVYE MLRDRGYGVR DEQIKLERHK FIERYGNPVR RDELTFNATK LNGPSDQIYV FFPNEAKPGV KTIRNYVEKM KNENVFAGIL
101: VVQQALSAFA RSAVQEVSQK YHLEVFQEAE LLVNIKDHVL VPEHVLLTPE DKKTLLERYT VKETQLPRIQ ITDPIARYYG MKRGQVVKIT RASETAGRYI
201: TYRYVV

Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Arabidopsis Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.