CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93029
CDY15121

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22320.1	CDX93029	AT3G24650.1	10743655
AT3G22320.1	CDY15121	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001864.1-P	Field mustard	nucleus	100.0	100.0
CDX92939	Canola	nucleus	100.0	100.0
CDY24303	Canola	nucleus	100.0	100.0
CDY10635	Canola	nucleus	94.66	94.66
CDY37407	Canola	nucleus	94.66	94.66
AT3G22320.1	Thale cress	nucleus	93.69	94.15
VIT_11s0016g03530.t01	Wine grape	nucleus	84.47	84.47
Solyc03g025570.2.1	Tomato	cytosol	46.6	82.05
Solyc05g051790.2.1	Tomato	nucleus	74.27	81.38
KRH48354	Soybean	nucleus	80.1	80.1
KRH39324	Soybean	nucleus	80.1	80.1
PGSC0003DMT400051454	Potato	nucleus	79.61	79.61
PGSC0003DMT400077392	Potato	nucleus	78.64	78.64
GSMUA_AchrUn_...	Banana	nucleus	73.3	72.95
GSMUA_Achr2P00920_001	Banana	nucleus	67.96	68.63
Zm00001d012557_P001	Maize	extracellular	67.48	66.19
Os01t0805800-01	Rice	nucleus	66.99	65.71
KXG33574	Sorghum	nucleus	66.02	64.76
Solyc05g053510.1.1	Tomato	nucleus	64.56	64.25
TraesCS3D01G326800.2	Wheat	nucleus	65.05	63.81
TraesCS3B01G363400.1	Wheat	nucleus	65.05	63.81
TraesCS3A01G333200.2	Wheat	nucleus	65.05	63.81
HORVU3Hr1G078930.1	Barley	nucleus	65.05	63.81
PGSC0003DMT400069997	Potato	nucleus	63.11	62.8
Zm00001d003242_P001	Maize	mitochondrion	62.62	62.62
KXG26596	Sorghum	nucleus	61.16	61.16
TraesCS2A01G346300.1	Wheat	nucleus	60.19	60.49
TraesCS2D01G345000.2	Wheat	nucleus	60.19	60.49
TraesCS2B01G364600.1	Wheat	nucleus, plastid	60.68	59.81
TraesCS2D01G344900.1	Wheat	nucleus	60.68	59.81
TraesCS2A01G346200.1	Wheat	nucleus	60.19	59.33
TraesCS2B01G364700.1	Wheat	nucleus, plastid	58.74	59.02
CDX70895	Canola	nucleus	57.28	56.73
Os04t0487300-01	Rice	nucleus	45.63	56.29
CDX88871	Canola	nucleus	56.8	55.19
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	52.43	52.94
TraesCS2A01G346100.2	Wheat	nucleus	52.43	52.94
HORVU2Hr1G084270.1	Barley	nucleus	51.94	52.45
TraesCS2B01G364500.1	Wheat	nucleus	51.94	52.45
HORVU1Hr1G048500.1	Barley	endoplasmic reticulum	12.14	51.02
HORVU6Hr1G071230.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	24.27	50.0
HORVU7Hr1G020400.1	Barley	cytosol, mitochondrion, nucleus, plastid	25.24	46.43
HORVU1Hr1G052270.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.24	46.43
HORVU4Hr1G028860.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	24.76	45.54
HORVU2Hr1G026650.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	24.27	44.64
CDY11839	Canola	nucleus	44.66	43.81
CDX88650	Canola	nucleus	44.66	43.81
HORVU2Hr1G084300.6	Barley	nucleus, plastid	58.25	43.48
HORVU6Hr1G011700.1	Barley	endoplasmic reticulum, nucleus	33.5	37.91
CDY06137	Canola	nucleus	35.92	32.03
CDX72073	Canola	nucleus	35.44	31.74
CDY14763	Canola	nucleus	32.04	29.6
CDY06931	Canola	nucleus	31.55	29.15
CDY13211	Canola	nucleus	33.01	27.64
CDX76143	Canola	cytosol	32.52	26.69

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	GO:A0A078HCN7	UniProt:A0A078HCN7	ProteinID:CDY24303.1
EnsemblPlants:CDY35542	ProteinID:CDY35542	ProteinID:CDY35542.1	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00058599001	InterPro:IPR035913	InterPro:IPR036710
HAMAP:MF_00025	PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	ScanProsite:PS01110
PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RNA_pol_subH/Rpb5_CS	InterPro:RPB5-like
InterPro:RpoH/RPB5	SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI00025406C2	:	:

Description

BnaA05g16440DBnaA03g36610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCN7]

Coordinates

chrLK032354:+:133379..134438

Molecular Weight (calculated)

24230.6 Da

IEP (calculated)

9.879

GRAVY (calculated)

-0.402

Length

206 amino acids

Sequence
(BLAST)

001: MGLTEEEIKR LYRIQKTLMQ MLKDRGYFIA DSEITMSLSQ FVRKYGDNMK REDLVTLKAK RNDSSDQLYI FFPDEAKVGV KTMKVYTNRM KSENVYRAIL
101: VVQQNLTPFA RTCISEISSK FHLEVFQEAE MLVNIKEHVL VPEHQVLTTE EKKTLLERYT VKETQLPRIQ VTDPIARYFG LKRGQVVKII RPSETAGRYV
201: TYRYVV

Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Arabidopsis Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.