Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr7P23040_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G22320.1 | GSMUA_Achr7P23040_001 | AT3G24650.1 | 10743655 |
| AT3G22320.1 | GSMUA_AchrUn_... | AT3G24650.1 | 10743655 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012557_P001 | Maize | extracellular | 80.88 | 78.57 |
| TraesCS3D01G326800.2 | Wheat | nucleus | 80.88 | 78.57 |
| TraesCS3B01G363400.1 | Wheat | nucleus | 80.88 | 78.57 |
| TraesCS3A01G333200.2 | Wheat | nucleus | 80.88 | 78.57 |
| Os01t0805800-01 | Rice | nucleus | 80.88 | 78.57 |
| HORVU3Hr1G078930.1 | Barley | nucleus | 80.88 | 78.57 |
| KXG33574 | Sorghum | nucleus | 80.39 | 78.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 77.45 | 76.33 |
| Solyc03g025570.2.1 | Tomato | cytosol | 42.65 | 74.36 |
| VIT_11s0016g03530.t01 | Wine grape | nucleus | 74.51 | 73.79 |
| Solyc05g051790.2.1 | Tomato | nucleus | 67.16 | 72.87 |
| KRH39324 | Soybean | nucleus | 72.55 | 71.84 |
| KRH48354 | Soybean | nucleus | 72.55 | 71.84 |
| PGSC0003DMT400051454 | Potato | nucleus | 70.59 | 69.9 |
| AT3G22320.1 | Thale cress | nucleus | 69.12 | 68.78 |
| PGSC0003DMT400077392 | Potato | nucleus | 69.12 | 68.45 |
| CDX92939 | Canola | nucleus | 68.63 | 67.96 |
| Bra001864.1-P | Field mustard | nucleus | 68.63 | 67.96 |
| CDY24303 | Canola | nucleus | 68.63 | 67.96 |
| CDY35542 | Canola | nucleus | 68.63 | 67.96 |
| Bra031350.1-P | Field mustard | nucleus | 67.16 | 66.5 |
| CDY37407 | Canola | nucleus | 67.16 | 66.5 |
| CDY10635 | Canola | nucleus | 67.16 | 66.5 |
| Solyc05g053510.1.1 | Tomato | nucleus | 60.78 | 59.9 |
| PGSC0003DMT400069997 | Potato | nucleus | 60.29 | 59.42 |
| Bra006521.1-P | Field mustard | nucleus | 52.94 | 54.27 |
| CDX88871 | Canola | nucleus | 53.43 | 51.42 |
| CDX70895 | Canola | nucleus | 51.96 | 50.96 |
| AT3G16680.1 | Thale cress | golgi | 20.59 | 48.28 |
| CDX88650 | Canola | nucleus | 46.57 | 45.24 |
| Bra006791.1-P | Field mustard | nucleus | 46.57 | 45.24 |
| CDY11839 | Canola | nucleus | 46.57 | 45.24 |
| AT5G57980.1 | Thale cress | nucleus | 45.59 | 44.29 |
| GSMUA_Achr9P19340_001 | Banana | nucleus | 21.57 | 44.0 |
Protein Annotations
| MapMan:15.1.6.3 | Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | InterPro:DNA_RNA_pol_RPB5_euk/virus | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:GSMUA_Achr2G00920_001 | EnsemblPlants:GSMUA_Achr2P00920_001 | EnsemblPlants:GSMUA_Achr2T00920_001 |
| InterPro:IPR035913 | InterPro:IPR036710 | UniProt:M0S433 | HAMAP:MF_00025 | PFAM:PD005155 | PFAM:PF01191 |
| PFAM:PF03871 | PIRSF:PIRSF000747 | PANTHER:PTHR10535 | InterPro:RNA_pol_Rpb5_N | InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C |
| InterPro:RPB5-like | InterPro:RpoH/RPB5 | SUPFAM:SSF53036 | SUPFAM:SSF55287 | UniParc:UPI000296A194 | : |
Description
DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G00920_001]
Coordinates
chr2:+:5586214..5599197
Molecular Weight (calculated)
24108.6 Da
IEP (calculated)
9.875
GRAVY (calculated)
-0.421
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDETIGRLF RIRRTVMQML RDRGYLVVDF EINMTKLDFL HKFGEGVKRE DLLINKSRKN DPTDQIYVFF PNDEKVGMKH IKKYVELMKA ESVPRAILVL
101: QQNLTPFAKS YLQELSPKYH LEVFQEAELL VNIKDHVLVA EHQMLTNEEK KTLLERYTLK ETQLPRIQVT DPIARYYGLK RGQVVKIIRP SETAGRYVTY
201: RYVV
101: QQNLTPFAKS YLQELSPKYH LEVFQEAELL VNIKDHVLVA EHQMLTNEEK KTLLERYTLK ETQLPRIQVT DPIARYYGLK RGQVVKIIRP SETAGRYVTY
201: RYVV
001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV
Arabidopsis Description
NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.