CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016940.1-P	Field mustard	nucleus	99.1	99.1
CDY14763	Canola	nucleus	95.07	95.07
AT2G41340.1	Thale cress	nucleus	70.4	72.02
CDY06137	Canola	nucleus	60.54	58.44
VIT_08s0007g05540.t01	Wine grape	nucleus	59.64	58.08
CDX72073	Canola	nucleus	59.64	57.83
KRG95122	Soybean	nucleus	50.67	55.12
PGSC0003DMT400057891	Potato	nucleus	24.22	54.55
Solyc04g040170.2.1	Tomato	nucleus	54.71	53.74
KRH66799	Soybean	nucleus	56.5	53.39
PGSC0003DMT400027609	Potato	cytosol	54.26	53.3
GSMUA_Achr9P19340_001	Banana	nucleus	23.32	52.0
Solyc01g098320.2.1	Tomato	nucleus	50.67	49.78
Os12t0139500-01	Rice	nucleus	45.29	44.49
TraesCS5A01G131700.1	Wheat	nucleus	42.6	42.04
TraesCS5B01G132800.1	Wheat	nucleus	41.26	40.71
HORVU5Hr1G043080.6	Barley	nucleus	40.81	39.91
CDY13211	Canola	nucleus	43.5	39.43
TraesCS5D01G140300.1	Wheat	nucleus	39.91	39.38
TraesCS4B01G133200.1	Wheat	nucleus	44.39	39.29
TraesCS4D01G128200.1	Wheat	nucleus	43.95	38.89
TraesCS4A01G185400.1	Wheat	nucleus	43.95	38.89
CDX76143	Canola	cytosol	42.6	37.85
KXG22818	Sorghum	mitochondrion	18.39	37.27
EES09238	Sorghum	nucleus	43.95	37.26
HORVU0Hr1G038750.1	Barley	nucleus	43.05	35.56
CDY10635	Canola	nucleus	30.04	32.52
CDY37407	Canola	nucleus	29.15	31.55
CDY35542	Canola	nucleus	29.15	31.55
CDY24303	Canola	nucleus	29.15	31.55
CDX92939	Canola	nucleus	29.15	31.55
CDX88871	Canola	nucleus	29.6	31.13
CDX88650	Canola	nucleus	28.7	30.48
CDY11839	Canola	nucleus	28.25	30.0
CDX70895	Canola	nucleus	27.8	29.81
Os11t0143400-00	Rice	nucleus	44.84	29.76

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	GO:A0A078F0K5	EnsemblPlants:CDY06931	ProteinID:CDY06931
ProteinID:CDY06931.1	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00123231001	InterPro:IPR035913	InterPro:IPR036710	PFAM:PD005155	PFAM:PF01191
PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	PANTHER:PTHR10535:SF2	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf
InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI0004EDC3B6	:

Description

BnaA04g23840D

Coordinates

chrLK031974:-:269873..271297

Molecular Weight (calculated)

25204.3 Da

IEP (calculated)

8.074

GRAVY (calculated)

-0.343

Length

223 amino acids

Sequence
(BLAST)

001: MEGKGKELAV GSGLSKSLDE SRVDSHSYYL ARRTTMEMLR DRGYDISNED INLTLQEFRS LYGDPPNVDR LRISAQHCSD SSKKIAVVFC GSGIVKVNAI
101: REIAADVLGR ENLTGLILVL QSDITNQALK AVELFSFKVE LFHLTELLVN ITKHVLRPKH RVLNDQGKES LFKKFSIEEQ QLPKLLKKDP TAKYYGLEKG
201: QVVEVTYKGE GSESDHVLYR CVW

Best Arabidopsis Sequence Match ( AT2G41340.1 )
(BLAST)

001: MEGKGKEIVV GHSISKSSVE CHKYYLARRT TMEMLRDRGY DVSDEDINLS LQQFRALYGE HPDVDLLRIS AKHRFDSSKK ISVVFCGTGI VKVNAMRVIA
101: ADVLSRENIT GLILVLQSHI TNQALKAVEL FSFKVELFEI TDLLVNVSKH VLRPKHQVLN DKEKESLLKK FSIEEKQLPR LSSKDPIVRY YGLETGQVMK
201: VTYKDELSES HVTYRCVS

Arabidopsis Description

NRPD5BDNA-directed RNA polymerases IV and V subunit 5B [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.