CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007300.1-P	Field mustard	nucleus	97.39	96.97
CDY06137	Canola	nucleus	97.39	96.97
AT3G57080.1	Thale cress	nucleus	76.96	79.73
PGSC0003DMT400057891	Potato	nucleus	26.96	62.63
CDY06931	Canola	nucleus	57.83	59.64
CDY14763	Canola	nucleus	56.96	58.74
VIT_08s0007g05540.t01	Wine grape	nucleus	57.39	57.64
Solyc04g040170.2.1	Tomato	nucleus	56.52	57.27
GSMUA_Achr9P19340_001	Banana	nucleus	24.78	57.0
PGSC0003DMT400027609	Potato	cytosol	56.09	56.83
KRG95122	Soybean	nucleus	49.13	55.12
KRH66799	Soybean	nucleus	54.78	53.39
Solyc01g098320.2.1	Tomato	nucleus	52.17	52.86
Os12t0139500-01	Rice	nucleus	44.78	45.37
TraesCS5A01G131700.1	Wheat	nucleus	42.17	42.92
TraesCS5B01G132800.1	Wheat	nucleus	41.3	42.04
TraesCS5D01G140300.1	Wheat	nucleus	40.87	41.59
HORVU5Hr1G043080.6	Barley	nucleus	40.43	40.79
CDY13211	Canola	nucleus	43.48	40.65
TraesCS4D01G128200.1	Wheat	nucleus	43.91	40.08
TraesCS4A01G185400.1	Wheat	nucleus	43.91	40.08
TraesCS4B01G133200.1	Wheat	nucleus	43.48	39.68
EES09238	Sorghum	nucleus	45.22	39.54
KXG22818	Sorghum	mitochondrion	18.7	39.09
CDX76143	Canola	cytosol	42.61	39.04
HORVU0Hr1G038750.1	Barley	nucleus	43.48	37.04
CDY35542	Canola	nucleus	31.74	35.44
CDY24303	Canola	nucleus	31.74	35.44
CDY10635	Canola	nucleus	31.74	35.44
CDX92939	Canola	nucleus	31.74	35.44
CDY37407	Canola	nucleus	30.87	34.47
CDX88871	Canola	nucleus	28.26	30.66
Os11t0143400-00	Rice	nucleus	44.78	30.65
CDX70895	Canola	nucleus	27.39	30.29
CDX88650	Canola	nucleus	27.39	30.0
CDY11839	Canola	nucleus	26.96	29.52

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	GO:A0A078CAQ5	EnsemblPlants:CDX72073	ProteinID:CDX72073
ProteinID:CDX72073.1	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00155870001	InterPro:IPR035913	InterPro:IPR036710	PFAM:PD005155	PFAM:PF01191
PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	PANTHER:PTHR10535:SF2	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf
InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI0004EEA75C	SEG:seg

Description

BnaC08g28010D

Coordinates

chrLK031795:-:2214097..2215986

Molecular Weight (calculated)

26204.5 Da

IEP (calculated)

9.420

GRAVY (calculated)

-0.346

Length

230 amino acids

Sequence
(BLAST)

001: MEGIGNDKSS CSSSSTVPGP CLSKYVDPSS EESHRYYLAR RNALEMLRDR GYEVSLEDTN LSLQDFRTVY GERPDVDRLR ISAHHRSDSS NKVKVVFFGT
101: SKVKVNTIRS VAAEILSQET ITGLILVLQN QVTDKALKAI ELFTFKVEIF QITDLLVNLT KHVLSLRHRV LTDGEKKALL KHFNIEEKQL PRISKKDAVV
201: RYYGLEKGQV VKVSYRGELT ESYVAYRCVW

Best Arabidopsis Sequence Match ( AT3G57080.1 )
(BLAST)

001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW

Arabidopsis Description

NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.