Factsheet for TraesCS5D01G140300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G132800.1	Wheat	nucleus	97.35	97.35
TraesCS5A01G131700.1	Wheat	nucleus	96.02	96.02
HORVU5Hr1G043080.6	Barley	nucleus	89.82	89.04
TraesCS4D01G128200.1	Wheat	nucleus	73.45	65.87
Os12t0139500-01	Rice	nucleus	65.49	65.2
GSMUA_Achr9P19340_001	Banana	nucleus	26.11	59.0
PGSC0003DMT400057891	Potato	nucleus	23.89	54.55
KXG22818	Sorghum	mitochondrion	26.55	54.55
Solyc04g040170.2.1	Tomato	nucleus	46.46	46.26
PGSC0003DMT400027609	Potato	cytosol	46.46	46.26
Solyc01g098320.2.1	Tomato	nucleus	46.02	45.81
VIT_08s0007g05540.t01	Wine grape	nucleus	46.02	45.41
KRG95122	Soybean	nucleus	39.82	43.9
Os11t0143400-00	Rice	nucleus	65.04	43.75
VIT_13s0139g00310.t01	Wine grape	nucleus	42.04	42.99
KRH66799	Soybean	nucleus	44.69	42.8
AT2G41340.1	Thale cress	nucleus	40.27	41.74
CDY14763	Canola	nucleus	41.15	41.7
AT3G57080.1	Thale cress	nucleus	40.71	41.44
CDX72073	Canola	nucleus	41.59	40.87
Bra007300.1-P	Field mustard	nucleus	41.59	40.69
CDY06137	Canola	nucleus	41.59	40.69
Bra016940.1-P	Field mustard	nucleus	39.82	40.36
CDY06931	Canola	nucleus	39.38	39.91
AT3G54490.1	Thale cress	nucleus	40.27	39.06
KRH62911	Soybean	nucleus	31.42	38.8
Bra014812.1-P	Field mustard	nucleus	40.27	38.72
CDY13211	Canola	nucleus	40.71	37.4
CDX76143	Canola	cytosol	40.71	36.65
KRH30040	Soybean	nucleus	38.05	36.44
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	32.74	36.27
TraesCS3D01G326800.2	Wheat	nucleus	32.74	35.24
TraesCS2D01G345000.2	Wheat	nucleus	30.97	34.15
TraesCS2D01G344900.1	Wheat	nucleus	30.53	33.01

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	PFAM:PD005155
PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	PANTHER:PTHR10535:SF2	InterPro:RNA_pol_Rpb5_N
InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF53036	SUPFAM:SSF55287	EnsemblPlantsGene:TraesCS5D01G140300
EnsemblPlants:TraesCS5D01G140300.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:223889506..223895122

Molecular Weight (calculated)

26012.4 Da

IEP (calculated)

7.620

GRAVY (calculated)

-0.369

Length

226 amino acids

Sequence
(BLAST)

001: MEPSFDDVPE VVGWMSSMVD RGGRASQESH RLFLARRTAL EMLRDRGYSV PESELARTLP EFRAWWAPEP EIERLTFSTF LASDHSDKVK ILFCGPEPVR
101: IATIQKIYDQ IEGENFSRLI LILQGKIMPR AKESVKEKFT FKVDIFQVNE LLVNTSTHAL KPKHEVLTAE EKARLLKKYN VQDSQLPRML ETDPVARYYG
201: LGKGTVLKVT YDSELTGNHV TYRCIF

Best Arabidopsis Sequence Match ( AT2G41340.1 )
(BLAST)

001: MEGKGKEIVV GHSISKSSVE CHKYYLARRT TMEMLRDRGY DVSDEDINLS LQQFRALYGE HPDVDLLRIS AKHRFDSSKK ISVVFCGTGI VKVNAMRVIA
101: ADVLSRENIT GLILVLQSHI TNQALKAVEL FSFKVELFEI TDLLVNVSKH VLRPKHQVLN DKEKESLLKK FSIEEKQLPR LSSKDPIVRY YGLETGQVMK
201: VTYKDELSES HVTYRCVS

Arabidopsis Description

NRPD5BDNA-directed RNA polymerases IV and V subunit 5B [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.