Factsheet for AT3G54490.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014812.1-P	Field mustard	nucleus	73.39	72.77
CDY13211	Canola	nucleus	72.96	69.11
CDX76143	Canola	cytosol	71.67	66.53
VIT_13s0139g00310.t01	Wine grape	nucleus	48.07	50.68
KRH62911	Soybean	nucleus	38.63	49.18
GSMUA_Achr9P19340_001	Banana	nucleus	20.17	47.0
AT3G57080.1	Thale cress	nucleus	42.92	45.05
KRH30040	Soybean	nucleus	45.06	44.49
Os12t0139500-01	Rice	nucleus	42.49	43.61
AT2G41340.1	Thale cress	nucleus	40.34	43.12
TraesCS5A01G131700.1	Wheat	nucleus	40.34	41.59
TraesCS5B01G132800.1	Wheat	nucleus	40.34	41.59
HORVU5Hr1G043080.6	Barley	nucleus	39.91	40.79
TraesCS5D01G140300.1	Wheat	nucleus	39.06	40.27
KXG22818	Sorghum	mitochondrion	18.45	39.09
TraesCS4A01G185400.1	Wheat	nucleus	41.63	38.49
TraesCS4D01G128200.1	Wheat	nucleus	41.63	38.49
EES09238	Sorghum	nucleus	43.35	38.4
TraesCS4B01G133200.1	Wheat	nucleus	41.2	38.1
HORVU0Hr1G038750.1	Barley	nucleus	42.49	36.67
AT3G22320.1	Thale cress	nucleus	27.47	31.22
AT5G57980.1	Thale cress	nucleus	26.61	29.52
Os11t0143400-00	Rice	nucleus	42.49	29.46
AT3G16680.1	Thale cress	golgi	9.44	25.29

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	EntrezGene:824614	ProteinID:AEE79238.1	ArrayExpress:AT3G54490
EnsemblPlantsGene:AT3G54490	RefSeq:AT3G54490	TAIR:AT3G54490	RefSeq:AT3G54490-TAIR-G	EnsemblPlants:AT3G54490.1	TAIR:AT3G54490.1
Unigene:At.71274	ProteinID:CAB77569.1	ncoils:Coil	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0000419	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710
RefSeq:NP_191013.1	PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PO:PO:0000293
PANTHER:PTHR10535	PANTHER:PTHR10535:SF6	UniProt:Q9M1H8	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C
InterPro:RPB5-like	Symbol:RPB5E	SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI000004885B	:

Description

NRPE5CDNA-directed RNA polymerase V subunit 5C [Source:UniProtKB/Swiss-Prot;Acc:Q9M1H8]

Coordinates

chr3:+:20173605..20175462

Molecular Weight (calculated)

26887.6 Da

IEP (calculated)

6.674

GRAVY (calculated)

-0.336

Length

233 amino acids

Sequence
(BLAST)

001: MEETMAEEGC CENVESTFDD GTNCISKTED TGGIESKRFY LARTTAFEML RDRGYEVNEA ELSLTLSEFR SVFGEKPELE RLRICVPLRS DPKKKILVVF
101: MGTEPITVKS VRALHIQISN NVGLHAMILV LQSKMNHFAQ KALTTFPFTV ETFPIEDLLV NITKHIQQPK IEILNKEEKE QLLRKHALED KQLPYLQEKD
201: SFVRYYGLKK KQVVKITYSK EPVGDFVTYR CII

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.