CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G128200.1	Wheat	nucleus	66.16	69.05
TraesCS4A01G185400.1	Wheat	nucleus	65.78	68.65
TraesCS4B01G133200.1	Wheat	nucleus	65.4	68.25
GSMUA_Achr9P19340_001	Banana	nucleus	25.48	67.0
HORVU0Hr1G038750.1	Barley	nucleus	65.02	63.33
KXG22818	Sorghum	mitochondrion	25.1	60.0
PGSC0003DMT400057891	Potato	nucleus	22.43	59.6
VIT_08s0007g05540.t01	Wine grape	nucleus	45.25	51.97
PGSC0003DMT400027609	Potato	cytosol	42.21	48.9
Solyc04g040170.2.1	Tomato	nucleus	42.21	48.9
KRG95122	Soybean	nucleus	36.88	47.32
Solyc01g098320.2.1	Tomato	nucleus	40.68	47.14
VIT_13s0139g00310.t01	Wine grape	nucleus	39.54	47.06
KRH66799	Soybean	nucleus	41.44	46.19
AT3G57080.1	Thale cress	nucleus	38.4	45.5
CDY14763	Canola	nucleus	38.4	45.29
CDX72073	Canola	nucleus	39.54	45.22
CDY06137	Canola	nucleus	39.54	45.02
Bra007300.1-P	Field mustard	nucleus	39.54	45.02
Bra016940.1-P	Field mustard	nucleus	37.64	44.39
CDY06931	Canola	nucleus	37.26	43.95
Bra014812.1-P	Field mustard	nucleus	39.16	43.83
AT3G54490.1	Thale cress	nucleus	38.4	43.35
AT2G41340.1	Thale cress	nucleus	35.74	43.12
CDY13211	Canola	nucleus	39.54	42.28
CDX76143	Canola	cytosol	39.54	41.43
KRH30040	Soybean	nucleus	34.22	38.14
KXG33574	Sorghum	nucleus	30.42	38.1
KRH62911	Soybean	nucleus	26.24	37.7
KXG26596	Sorghum	nucleus	28.9	36.89

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	EntrezGene:8085637	UniProt:C5Y4H1	InterPro:DNA_RNA_pol_RPB5_euk/virus
EnsemblPlants:EES09238	ProteinID:EES09238	ProteinID:EES09238.1	GO:GO:0000428	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	PFAM:PD005155
PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	PANTHER:PTHR10535:SF2	InterPro:RNA_pol_Rpb5_N
InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	EnsemblPlantsGene:SORBI_3005G030600	SUPFAM:SSF53036	SUPFAM:SSF55287
unigene:Sbi.756	UniParc:UPI0001A867C3	RefSeq:XP_002450250.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:2743245..2746820

Molecular Weight (calculated)

29282.1 Da

IEP (calculated)

5.249

GRAVY (calculated)

-0.181

Length

263 amino acids

Sequence
(BLAST)

001: MDLNQFVPSQ NSALTMDSAE STAAAAARAP NGAARAVDDY DDDDDAVPEV AACISAMLDL GGSVESKRLF LARRTALEML RDRGYAVPED ELARTLPEFR
101: AWWEDKPELE RLAFSTTLAS DPSSKVKVVF CPPEPVKIAA IRVVYTGVKD ENLSRLILIL QGRIMSKARE AIKEIFPYKV DTFQITELLV NITKHALKPK
201: HQVLTAEEKA KLLKEYNVVD SQLPRMLEND AVARYYGLGK GTVVKVIYDS ELTGNHVTYR CIF

Best Arabidopsis Sequence Match ( AT3G57080.1 )
(BLAST)

001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW

Arabidopsis Description

NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.