CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P19340_001	Banana	nucleus	47.27	52.0
PGSC0003DMT400057891	Potato	nucleus	42.73	47.47
TraesCS5A01G131700.1	Wheat	nucleus	56.36	27.43
TraesCS5B01G132800.1	Wheat	nucleus	56.36	27.43
HORVU5Hr1G043080.6	Barley	nucleus	56.36	27.19
TraesCS5D01G140300.1	Wheat	nucleus	54.55	26.55
Os12t0139500-01	Rice	nucleus	54.55	26.43
EES09238	Sorghum	nucleus	60.0	25.1
VIT_08s0007g05540.t01	Wine grape	nucleus	49.09	23.58
KRG95122	Soybean	nucleus	43.64	23.41
Solyc04g040170.2.1	Tomato	nucleus	46.36	22.47
PGSC0003DMT400027609	Potato	cytosol	46.36	22.47
KRH66799	Soybean	nucleus	48.18	22.46
Solyc01g098320.2.1	Tomato	nucleus	45.45	22.03
KRH62911	Soybean	nucleus	36.36	21.86
VIT_13s0139g00310.t01	Wine grape	nucleus	40.91	20.36
AT3G57080.1	Thale cress	nucleus	39.09	19.37
AT2G41340.1	Thale cress	nucleus	38.18	19.27
Bra014812.1-P	Field mustard	nucleus	40.91	19.15
CDY14763	Canola	nucleus	38.18	18.83
Bra016940.1-P	Field mustard	nucleus	38.18	18.83
CDX76143	Canola	cytosol	42.73	18.73
CDY13211	Canola	nucleus	41.82	18.7
CDX72073	Canola	nucleus	39.09	18.7
Bra007300.1-P	Field mustard	nucleus	39.09	18.61
CDY06137	Canola	nucleus	39.09	18.61
KXG33574	Sorghum	nucleus	35.45	18.57
AT3G54490.1	Thale cress	nucleus	39.09	18.45
CDY06931	Canola	nucleus	37.27	18.39
Os11t0143400-00	Rice	nucleus	53.64	17.56
KXG26596	Sorghum	nucleus	32.73	17.48
KRH30040	Soybean	nucleus	37.27	17.37

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.90.940.20	UniProt:A0A1B6PB03	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	EnsemblPlants:KXG22818
ProteinID:KXG22818	ProteinID:KXG22818.2	PFAM:PD005155	PFAM:PF01191	PANTHER:PTHR10535	PANTHER:PTHR10535:SF2
InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	EnsemblPlantsGene:SORBI_3008G012200	SUPFAM:SSF55287	UniParc:UPI000B425FF6	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:1023815..1026799

Molecular Weight (calculated)

12394.0 Da

IEP (calculated)

9.156

GRAVY (calculated)

-0.325

Length

110 amino acids

Sequence
(BLAST)

001: MASRSSLLFS LPPRCDPRAL KATGVERDGG SIQSRLVNIT KHVLKPKHEV LTVEEKVKLQ KDYNVVDSHL PLMLESDAVA HYQGFRQGTV VKVTYDNELT
101: GNHVTYRCIF

Best Arabidopsis Sequence Match ( AT3G54490.1 )
(BLAST)

001: MEETMAEEGC CENVESTFDD GTNCISKTED TGGIESKRFY LARTTAFEML RDRGYEVNEA ELSLTLSEFR SVFGEKPELE RLRICVPLRS DPKKKILVVF
101: MGTEPITVKS VRALHIQISN NVGLHAMILV LQSKMNHFAQ KALTTFPFTV ETFPIEDLLV NITKHIQQPK IEILNKEEKE QLLRKHALED KQLPYLQEKD
201: SFVRYYGLKK KQVVKITYSK EPVGDFVTYR CII

Arabidopsis Description

NRPE5CDNA-directed RNA polymerase V subunit 5C [Source:UniProtKB/Swiss-Prot;Acc:Q9M1H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.