Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G132800.1 | Wheat | nucleus | 91.67 | 92.48 |
| TraesCS5A01G131700.1 | Wheat | nucleus | 91.23 | 92.04 |
| TraesCS5D01G140300.1 | Wheat | nucleus | 89.04 | 89.82 |
| Os12t0139500-01 | Rice | nucleus | 67.54 | 67.84 |
| HORVU0Hr1G038750.1 | Barley | nucleus | 75.44 | 63.7 |
| GSMUA_Achr9P19340_001 | Banana | nucleus | 27.19 | 62.0 |
| PGSC0003DMT400057891 | Potato | nucleus | 24.56 | 56.57 |
| KXG22818 | Sorghum | mitochondrion | 27.19 | 56.36 |
| PGSC0003DMT400027609 | Potato | cytosol | 47.37 | 47.58 |
| Solyc04g040170.2.1 | Tomato | nucleus | 46.93 | 47.14 |
| Solyc01g098320.2.1 | Tomato | nucleus | 46.49 | 46.7 |
| VIT_08s0007g05540.t01 | Wine grape | nucleus | 46.49 | 46.29 |
| Os11t0143400-00 | Rice | nucleus | 67.11 | 45.54 |
| KRG95122 | Soybean | nucleus | 40.79 | 45.37 |
| KRH66799 | Soybean | nucleus | 45.61 | 44.07 |
| VIT_13s0139g00310.t01 | Wine grape | nucleus | 42.54 | 43.89 |
| AT3G57080.1 | Thale cress | nucleus | 40.35 | 41.44 |
| AT2G41340.1 | Thale cress | nucleus | 39.47 | 41.28 |
| CDY14763 | Canola | nucleus | 40.35 | 41.26 |
| Bra016940.1-P | Field mustard | nucleus | 40.35 | 41.26 |
| CDY06931 | Canola | nucleus | 39.91 | 40.81 |
| CDX72073 | Canola | nucleus | 40.79 | 40.43 |
| CDY06137 | Canola | nucleus | 40.79 | 40.26 |
| Bra007300.1-P | Field mustard | nucleus | 40.79 | 40.26 |
| AT3G54490.1 | Thale cress | nucleus | 40.79 | 39.91 |
| KRH62911 | Soybean | nucleus | 32.02 | 39.89 |
| Bra014812.1-P | Field mustard | nucleus | 40.35 | 39.15 |
| CDY13211 | Canola | nucleus | 40.79 | 37.8 |
| CDX76143 | Canola | cytosol | 41.23 | 37.45 |
| KRH30040 | Soybean | nucleus | 38.16 | 36.86 |
| HORVU2Hr1G084270.1 | Barley | nucleus | 32.46 | 36.27 |
| HORVU3Hr1G078930.1 | Barley | nucleus | 32.46 | 35.24 |
| HORVU2Hr1G026650.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 14.04 | 28.57 |
| HORVU7Hr1G020400.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 13.6 | 27.68 |
| HORVU1Hr1G052270.3 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 13.6 | 27.68 |
| HORVU6Hr1G071230.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 11.84 | 27.0 |
| HORVU4Hr1G028860.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 13.16 | 26.79 |
| HORVU2Hr1G084300.6 | Barley | nucleus, plastid | 31.14 | 25.72 |
| HORVU1Hr1G048500.1 | Barley | endoplasmic reticulum | 4.82 | 22.45 |
| HORVU6Hr1G011700.1 | Barley | endoplasmic reticulum, nucleus | 14.47 | 18.13 |
Protein Annotations
| MapMan:15.1.6.3 | Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | UniProt:A0A287QZJ3 | InterPro:DNA_RNA_pol_RPB5_euk/virus | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:HORVU5Hr1G043080 | EnsemblPlants:HORVU5Hr1G043080.6 |
| InterPro:IPR035913 | InterPro:IPR036710 | PFAM:PD005155 | PFAM:PF01191 | PFAM:PF03871 | PIRSF:PIRSF000747 |
| PANTHER:PTHR10535 | PANTHER:PTHR10535:SF2 | InterPro:RNA_pol_Rpb5_N | InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C | InterPro:RPB5-like |
| SUPFAM:SSF53036 | SUPFAM:SSF55287 | UniParc:UPI000B46659D | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr5H:-:329712170..329718480
Molecular Weight (calculated)
26185.5 Da
IEP (calculated)
6.637
GRAVY (calculated)
-0.324
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: AHSAAAFDDV PEVVDWMSSM VDRGGRASQE SHRLFLARRT ALEMLRDRGY SVPESELART LPEFRAWWAQ EPEIERLSFS TFLASDHSDK VKILFCPPEP
101: VRIANIQEIH DQIEGENLSR LILILLGKIM PRAKESVKEK FTFKVDIFQV NELLVNISKH DLKPKHEVLT AEEKAKLLKL YNVEDSQLPR MLETDPVARY
201: YGLGKGTVLK VTYDSELTGK HVTYRCIF
101: VRIANIQEIH DQIEGENLSR LILILLGKIM PRAKESVKEK FTFKVDIFQV NELLVNISKH DLKPKHEVLT AEEKAKLLKL YNVEDSQLPR MLETDPVARY
201: YGLGKGTVLK VTYDSELTGK HVTYRCIF
001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW
Arabidopsis Description
NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.