Factsheet for Bra007300.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06137	Canola	nucleus	100.0	100.0
CDX72073	Canola	nucleus	96.97	97.39
AT3G57080.1	Thale cress	nucleus	76.62	79.73
PGSC0003DMT400057891	Potato	nucleus	26.41	61.62
Bra016940.1-P	Field mustard	nucleus	58.87	60.99
VIT_08s0007g05540.t01	Wine grape	nucleus	57.58	58.08
Solyc04g040170.2.1	Tomato	nucleus	56.71	57.71
PGSC0003DMT400027609	Potato	cytosol	56.28	57.27
GSMUA_Achr9P19340_001	Banana	nucleus	24.68	57.0
KRG95122	Soybean	nucleus	49.78	56.1
KRH66799	Soybean	nucleus	55.41	54.24
Solyc01g098320.2.1	Tomato	nucleus	52.38	53.3
Os12t0139500-01	Rice	nucleus	45.02	45.81
TraesCS5A01G131700.1	Wheat	nucleus	41.99	42.92
Bra014812.1-P	Field mustard	nucleus	43.29	42.55
TraesCS5B01G132800.1	Wheat	nucleus	41.13	42.04
TraesCS5D01G140300.1	Wheat	nucleus	40.69	41.59
HORVU5Hr1G043080.6	Barley	nucleus	40.26	40.79
TraesCS4A01G185400.1	Wheat	nucleus	44.16	40.48
TraesCS4D01G128200.1	Wheat	nucleus	44.16	40.48
TraesCS4B01G133200.1	Wheat	nucleus	43.72	40.08
EES09238	Sorghum	nucleus	45.02	39.54
KXG22818	Sorghum	mitochondrion	18.61	39.09
HORVU0Hr1G038750.1	Barley	nucleus	43.29	37.04
Bra031350.1-P	Field mustard	nucleus	32.03	35.92
Bra001864.1-P	Field mustard	nucleus	32.03	35.92
Bra006521.1-P	Field mustard	nucleus	27.27	31.66
Os11t0143400-00	Rice	nucleus	45.02	30.95
Bra006791.1-P	Field mustard	nucleus	27.71	30.48

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	EnsemblPlantsGene:Bra007300	EnsemblPlants:Bra007300.1	EnsemblPlants:Bra007300.1-P
InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0000419	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	UniProt:M4CSV8	PFAM:PD005155	PFAM:PF01191
PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	PANTHER:PTHR10535:SF2	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf
InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI0002542C7C	SEG:seg

Description

AT3G57080 (E=4e-088) RPB5B, NRPE5 | NRPE5; DNA binding / DNA-directed RNA polymerase

Coordinates

chrA09:+:28461479..28463243

Molecular Weight (calculated)

26290.7 Da

IEP (calculated)

9.419

GRAVY (calculated)

-0.302

Length

231 amino acids

Sequence
(BLAST)

001: MEGIIGNDKS SCSSSSTVPG PCLSKYVDPS SEESHRYYLA RRNALEMLRD RGYEVSLEDI NLSLQDFRTV YGERPDVDRL RISAHHRSDS SNKVKVVFFG
101: TGKVKVNTIR SVAAEILSQE TITGLILVLQ NQVTDKALKA IELFTFKVEI FQITDLLVNL TKHVLSLRHR VLTDGEKKAL LKQFNIEEKQ LPRISKKDAV
201: VRYYGLEKGQ VVKVSYRGEL TESYVAYRCV W

Best Arabidopsis Sequence Match ( AT3G57080.1 )
(BLAST)

001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW

Arabidopsis Description

NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.