Factsheet for Bra014812.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13211	Canola	nucleus	98.72	94.31
CDX76143	Canola	cytosol	97.02	90.84
AT3G54490.1	Thale cress	nucleus	72.77	73.39
KRH62911	Soybean	nucleus	39.57	50.82
VIT_13s0139g00310.t01	Wine grape	nucleus	45.53	48.42
KRH30040	Soybean	nucleus	46.81	46.61
GSMUA_Achr9P19340_001	Banana	nucleus	19.57	46.0
Os12t0139500-01	Rice	nucleus	43.4	44.93
Bra016940.1-P	Field mustard	nucleus	41.28	43.5
Bra007300.1-P	Field mustard	nucleus	42.55	43.29
TraesCS5B01G132800.1	Wheat	nucleus	40.0	41.59
TraesCS5A01G131700.1	Wheat	nucleus	40.0	41.59
KXG22818	Sorghum	mitochondrion	19.15	40.91
HORVU5Hr1G043080.6	Barley	nucleus	39.15	40.35
TraesCS5D01G140300.1	Wheat	nucleus	38.72	40.27
EES09238	Sorghum	nucleus	43.83	39.16
TraesCS4B01G133200.1	Wheat	nucleus	41.7	38.89
TraesCS4D01G128200.1	Wheat	nucleus	41.7	38.89
TraesCS4A01G185400.1	Wheat	nucleus	41.28	38.49
HORVU0Hr1G038750.1	Barley	nucleus	42.13	36.67
Bra001864.1-P	Field mustard	nucleus	28.09	32.04
Bra031350.1-P	Field mustard	nucleus	27.23	31.07
Os11t0143400-00	Rice	nucleus	43.4	30.36
Bra006521.1-P	Field mustard	nucleus	25.11	29.65
Bra006791.1-P	Field mustard	nucleus	25.11	28.1

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	EnsemblPlantsGene:Bra014812	EnsemblPlants:Bra014812.1	EnsemblPlants:Bra014812.1-P
InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0000419	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	UniProt:M4DE91	PFAM:PD005155	PFAM:PF01191
PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	PANTHER:PTHR10535:SF6	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf
InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI0002544EBE	:

Description

AT3G54490 (E=5e-101) RPB5E | RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E); DNA binding / DNA-directed RNA polymerase

Coordinates

chrA04:-:3332017..3333732

Molecular Weight (calculated)

26507.2 Da

IEP (calculated)

8.466

GRAVY (calculated)

-0.272

Length

235 amino acids

Sequence
(BLAST)

001: MEEVMAIERS YENGVSTFDD GAHSHCIAKT EDKGGVESKR FYLARTTALE MLRDRGYQVS DAELSLSLSE FRSGFGEKPD LERLRISVPL RSNPMKKILV
101: VFMGSEPVTV KTVRAIHSQV SSTVGLHGLI LVLQSKMNHF AKKELATFPC TVETFPIGDL LVNITKHTGQ PKIEILTKEE KEQLLSEHAL EDKQLPLLKE
201: KDSFVRYHGL KKSQVVKITY SKEPVGHFVT YRCIV

Best Arabidopsis Sequence Match ( AT3G54490.1 )
(BLAST)

001: MEETMAEEGC CENVESTFDD GTNCISKTED TGGIESKRFY LARTTAFEML RDRGYEVNEA ELSLTLSEFR SVFGEKPELE RLRICVPLRS DPKKKILVVF
101: MGTEPITVKS VRALHIQISN NVGLHAMILV LQSKMNHFAQ KALTTFPFTV ETFPIEDLLV NITKHIQQPK IEILNKEEKE QLLRKHALED KQLPYLQEKD
201: SFVRYYGLKK KQVVKITYSK EPVGDFVTYR CII

Arabidopsis Description

NRPE5CDNA-directed RNA polymerase V subunit 5C [Source:UniProtKB/Swiss-Prot;Acc:Q9M1H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.