CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04085
OQU89229

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22320.1	EES04085	AT3G24650.1	10743655
AT3G22320.1	OQU89229	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003242_P001	Maize	mitochondrion	85.44	85.44
Os04t0487300-01	Rice	nucleus	58.74	72.46
Solyc03g025570.2.1	Tomato	cytosol	38.84	68.38
GSMUA_AchrUn_...	Banana	nucleus	68.45	68.12
TraesCS2B01G364600.1	Wheat	nucleus, plastid	68.93	67.94
TraesCS2D01G344900.1	Wheat	nucleus	68.45	67.46
TraesCS2A01G346200.1	Wheat	nucleus	68.45	67.46
Solyc05g051790.2.1	Tomato	nucleus	60.68	66.49
TraesCS2A01G346300.1	Wheat	nucleus	66.02	66.34
TraesCS2D01G345000.2	Wheat	nucleus	66.02	66.34
PGSC0003DMT400077392	Potato	nucleus	66.02	66.02
VIT_11s0016g03530.t01	Wine grape	nucleus	65.53	65.53
TraesCS2B01G364700.1	Wheat	nucleus, plastid	65.05	65.37
PGSC0003DMT400051454	Potato	nucleus	64.56	64.56
KRH48354	Soybean	nucleus	62.14	62.14
KRH39324	Soybean	nucleus	61.65	61.65
AT3G22320.1	Thale cress	nucleus	61.16	61.46
HORVU1Hr1G048500.1	Barley	endoplasmic reticulum	14.56	61.22
Bra001864.1-P	Field mustard	nucleus	61.16	61.16
CDX92939	Canola	nucleus	61.16	61.16
CDY35542	Canola	nucleus	61.16	61.16
CDY24303	Canola	nucleus	61.16	61.16
KXG33574	Sorghum	nucleus	61.16	60.0
Bra031350.1-P	Field mustard	nucleus	59.22	59.22
CDY10635	Canola	nucleus	59.22	59.22
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	58.25	58.82
CDY37407	Canola	nucleus	58.74	58.74
TraesCS2B01G364500.1	Wheat	nucleus	57.77	58.33
HORVU2Hr1G084270.1	Barley	nucleus	57.28	57.84
TraesCS2A01G346100.2	Wheat	nucleus	57.28	57.84
Solyc05g053510.1.1	Tomato	nucleus	57.28	57.0
PGSC0003DMT400069997	Potato	nucleus	56.31	56.04
HORVU6Hr1G071230.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	27.18	56.0
HORVU7Hr1G020400.1	Barley	cytosol, mitochondrion, nucleus, plastid	27.67	50.89
HORVU1Hr1G052270.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	27.67	50.89
HORVU4Hr1G028860.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	27.67	50.89
HORVU2Hr1G026650.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	27.18	50.0
Bra006521.1-P	Field mustard	nucleus	47.57	49.25
HORVU2Hr1G084300.6	Barley	nucleus, plastid	65.05	48.55
AT3G16680.1	Thale cress	golgi	20.39	48.28
CDX88871	Canola	nucleus	49.03	47.64
AT5G57980.1	Thale cress	nucleus	48.54	47.62
CDX70895	Canola	nucleus	47.57	47.12
CDY11839	Canola	nucleus	44.66	43.81
Bra006791.1-P	Field mustard	nucleus	44.17	43.33
CDX88650	Canola	nucleus	44.17	43.33
HORVU6Hr1G011700.1	Barley	endoplasmic reticulum, nucleus	36.41	41.21
KXG22818	Sorghum	mitochondrion	17.48	32.73
EES09238	Sorghum	nucleus	36.89	28.9

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	UniProt:A0A1B6PLP7	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710
EnsemblPlants:KXG26596	ProteinID:KXG26596	ProteinID:KXG26596.1	HAMAP:MF_00025	PFAM:PD005155	PFAM:PF01191
PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C
InterPro:RPB5-like	InterPro:RpoH/RPB5	EnsemblPlantsGene:SORBI_3006G127500	SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI000220719F

Description

hypothetical protein

Coordinates

chr6:-:49249993..49254183

Molecular Weight (calculated)

23876.7 Da

IEP (calculated)

9.704

GRAVY (calculated)

-0.469

Length

206 amino acids

Sequence
(BLAST)

001: MASSDDETSR LYRIRRTVHE MLRDRGYAVS EEEINLPRDR FIDRFGNPVR RDDLASSAMK LDGSSEQIYV FFPNEAKPGV KTIRNYVEKM KQENVFAGIL
101: VVQQALSAFA RSAVQEVSQK YHLEVFQEAE LLVNIKNHVL VPDHVLLTAQ EKKSLLERYT VKETQLPRIQ ITDPIARYYG MKRGQVVKIT RSSETAGRYI
201: TYRYVV

Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Arabidopsis Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.