Factsheet for PGSC0003DMT400051746

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400019033
PGSC0003DMT400050100
PGSC0003DMT400050252
PGSC0003DMT400051454
PGSC0003DMT400069997
PGSC0003DMT400077392
PGSC0003DMT400083086

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	PGSC0003DMT400050100	AT1G08780.1	10743655
AT3G24650.1	PGSC0003DMT400051454	AT3G22320.1	10743655
AT3G24650.1	PGSC0003DMT400069997	AT3G22320.1	10743655
AT3G24650.1	PGSC0003DMT400077392	AT3G22320.1	10743655
AT3G24650.1	PGSC0003DMT400019033	AT5G20910.1	10743655
AT3G24650.1	PGSC0003DMT400050252	AT5G61380.1	10743655
AT3G24650.1	PGSC0003DMT400083086	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083590.2.1	Tomato	nucleus	91.21	91.36
PGSC0003DMT400051934	Potato	nucleus	77.24	72.26
VIT_07s0005g05400.t01	Wine grape	nucleus	48.62	38.47
CDY15121	Canola	nucleus	42.59	36.76
KRG99861	Soybean	nucleus	47.76	36.54
KRH46807	Soybean	nucleus	46.9	35.74
AT3G24650.1	Thale cress	nucleus	44.31	35.69
OQU89229	Sorghum	nucleus	24.66	35.57
CDX93029	Canola	nucleus	43.62	35.24
Bra013248.1-P	Field mustard	nucleus	43.45	35.15
GSMUA_AchrUn_...	Banana	nucleus	37.24	31.86
GSMUA_Achr7P23040_001	Banana	nucleus	38.1	30.15
Zm00001d042396_P003	Maize	nucleus	35.86	30.1
EES04085	Sorghum	nucleus	35.69	29.53
TraesCS3D01G412800.1	Wheat	nucleus	35.0	29.34
HORVU3Hr1G092690.2	Barley	nucleus	34.48	29.33
TraesCS3B01G452200.1	Wheat	nucleus	34.48	29.07
TraesCS3A01G417300.1	Wheat	nucleus	34.31	28.76
Os01t0911700-02	Rice	nucleus	35.52	28.34
PGSC0003DMT400052167	Potato	nucleus	11.38	23.0
PGSC0003DMT400064355	Potato	plastid	3.1	10.78
PGSC0003DMT400078282	Potato	nucleus	0.34	0.5
PGSC0003DMT400057590	Potato	nucleus	0.34	0.43

Protein Annotations

EntrezGene:102586621	MapMan:15.5.5.5	Gene3D:2.40.330.10	EMBL:AJ309217	EMBL:AJ309218	InterPro:B3_DNA-bd
ProteinID:CAC84596	ProteinID:CAC84596.1	ProteinID:CAC84597	ProteinID:CAC84597.2	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:M1BS61	PFAM:PF02362
EnsemblPlantsGene:PGSC0003DMG400020088	PGSC:PGSC0003DMG400020088	EnsemblPlants:PGSC0003DMT400051746	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0002950FAB	RefSeq:XP_006352828.1	SEG:seg	:

Description

VP1-ABI3 [Source:PGSC_GENE;Acc:PGSC0003DMG400020088]

Coordinates

chr6:-:58489492..58492357

Molecular Weight (calculated)

65319.8 Da

IEP (calculated)

6.605

GRAVY (calculated)

-0.658

Length

580 amino acids

Sequence
(BLAST)

001: MKRELNEVYY GVNKEDVHGF ENINMVPTDF DPMDDTDIWL NGNFSNDFTS LQDFPCMSSS SSTSNSLPTE QSDPCSSWAV QKSDGDEQNF DTISDQECLN
101: VMDLIDGDHE FLDPVISFFH SGENQQQKEQ ANDEQVSIFQ GDSELALMFL EWLKQNKDNI SAEDMRSIKL KRSTIESASK RLGSTKEGKK QLLRLILDWV
201: EQHRLQKKQM RVEQSIQNSA PFNFNNPNAC LYNASFPDSS PVMTGPIQGY IGDLYSNGSL FAPPYNQTMS GSATSRSWSP SQFTMATASQ YNPFPDNDST
301: DNVAIPDQPL FSAQYDPYQV FDGNSERLAR LGTCATKEAR KNRMARQRRV PLHHYRHQTQ NQRQISNEKS VMMGGKINNC AMSRANSLGN WVYWPCAAAA
401: PPIAMVPLAD TPQALPMERP AVQSQKHGST DKRQACKTEK NLKFLLQKVL KQSDVGNLGR IVLPKKEAES HLPQLETRDG ISIAMEDIGT SRVWNMKYRF
501: WPNNKSRMYL LENTGDFVLA NGLQEGDFIV IYADIKCGKY LIRGVKVRPN GAKSDSTQPA KKIVRKIAAV DSSPFAQAVR

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.