Factsheet for PGSC0003DMT400052167

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g094460.1.1	Tomato	nucleus	93.03	97.45
VIT_14s0068g01290.t01	Wine grape	nucleus	44.6	44.6
Bra032953.1-P	Field mustard	nucleus	44.25	41.23
CDY28525	Canola	nucleus	44.25	41.1
CDY34212	Canola	nucleus	43.9	40.91
AT3G26790.1	Thale cress	nucleus	43.21	39.62
KRH06856	Soybean	nucleus	46.34	39.35
KRG94672	Soybean	nucleus	44.95	38.86
CDY13657	Canola	nucleus	40.77	37.14
CDY53003	Canola	nucleus	40.42	36.94
Bra025229.1-P	Field mustard	nucleus	31.36	33.09
GSMUA_Achr3P32440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	23.0	32.51
GSMUA_Achr8P18070_001	Banana	nucleus	23.0	31.73
Os01t0713600-01	Rice	plastid	25.09	24.91
TraesCS3B01G278000.1	Wheat	plastid	25.44	24.17
TraesCS3D01G249100.1	Wheat	plastid	25.09	23.92
Zm00001d011712_P001	Maize	mitochondrion	26.83	19.64
KXG33236	Sorghum	mitochondrion, nucleus	26.48	19.39
TraesCS3A01G249100.2	Wheat	nucleus	25.09	18.56
HORVU3Hr1G067350.2	Barley	nucleus	23.34	18.06
PGSC0003DMT400051746	Potato	nucleus	23.0	11.38
PGSC0003DMT400051934	Potato	nucleus	21.95	10.16
PGSC0003DMT400064355	Potato	plastid	2.79	4.79
PGSC0003DMT400078282	Potato	nucleus	2.79	2.0
PGSC0003DMT400057590	Potato	nucleus	1.39	0.87

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:M1BSW4	PFAM:PF02362	EnsemblPlantsGene:PGSC0003DMG400020238
PGSC:PGSC0003DMG400020238	EnsemblPlants:PGSC0003DMT400052167	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF23	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI000296C5C5	SEG:seg	:	:	:

Description

Transcriptional factor B3 [Source:PGSC_GENE;Acc:PGSC0003DMG400020238]

Coordinates

chr2:+:48216430..48220283

Molecular Weight (calculated)

32660.3 Da

IEP (calculated)

4.442

GRAVY (calculated)

-0.501

Length

287 amino acids

Sequence
(BLAST)

001: MMEITEAYGV MADGNNIVVG DNNNNSMMNP PTPTPTPTPT KRSRSQRRRR SSLNFTSLDF LSHVPPPPPP LPAARVLEPT GFRFLFDKQL QNSDVSSLRR
101: IVVPKKAAER YLPALEIKEG FPITMDDMDG IHVWSFRYRY WPNNSSRMYV LENTGDFVQT HELRQGDYFA LHYNDQKQIY GIEARKAGSG AVFRGYEAED
201: VILTDYAQAA DDGNGAIIMN EPEMDMSSFY FPAMDNEMGM SFIYDTSFWN EPAFDFVGGP MTYYSTNVYP MPSFGSIEDS FSVDDFY

Best Arabidopsis Sequence Match ( AT3G26790.1 )
(BLAST)

001: MMVDENVETK ASTLVASVDH GFGSGSGHDH HGLSASVPLL GVNWKKRRMP RQRRSSSSFN LLSFPPPMPP ISHVPTPLPA RKIDPRKLRF LFQKELKNSD
101: VSSLRRMILP KKAAEAHLPA LECKEGIPIR MEDLDGFHVW TFKYRYWPNN NSRMYVLENT GDFVNAHGLQ LGDFIMVYQD LYSNNYVIQA RKASEEEEVD
201: VINLEEDDVY TNLTRIENTV VNDLLLQDFN HHNNNNNNNS NSNSNKCSYY YPVIDDVTTN TESFVYDTTA LTSNDTPLDF LGGHTTTTNN YYSKFGTFDG
301: LGSVENISLD DFY

Arabidopsis Description

FUS3B3 domain-containing transcription factor FUS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.