Factsheet for GSMUA_Achr8P18070_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P32440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	78.85	80.79
TraesCS3D01G249100.1	Wheat	plastid	52.4	36.21
TraesCS3B01G278000.1	Wheat	plastid	52.4	36.09
Os01t0713600-01	Rice	plastid	50.0	35.99
GSMUA_Achr3P00120_001	Banana	nucleus	31.25	35.91
TraesCS3A01G249100.2	Wheat	nucleus	52.88	28.35
KXG33236	Sorghum	mitochondrion, nucleus	52.88	28.06
Zm00001d011712_P001	Maize	mitochondrion	52.4	27.81
HORVU3Hr1G067350.2	Barley	nucleus	44.71	25.07
Solyc02g094460.1.1	Tomato	nucleus	32.69	24.82
VIT_14s0068g01290.t01	Wine grape	nucleus	33.17	24.04
Bra032953.1-P	Field mustard	nucleus	35.1	23.7
CDY34212	Canola	nucleus	35.1	23.7
AT3G26790.1	Thale cress	nucleus	35.58	23.64
CDY28525	Canola	nucleus	35.1	23.62
CDY13657	Canola	nucleus	35.58	23.49
CDY53003	Canola	nucleus	35.1	23.25
PGSC0003DMT400052167	Potato	nucleus	31.73	23.0
KRG94672	Soybean	nucleus	35.58	22.29
KRH06856	Soybean	nucleus	36.06	22.19
CDX94608	Canola	nucleus	32.69	19.48
CDY15679	Canola	nucleus	32.69	19.48
Bra030087.1-P	Field mustard	nucleus	31.25	18.9
CDY46611	Canola	nucleus	32.21	18.66
CDY66878	Canola	nucleus	32.21	18.61
AT1G28300.1	Thale cress	nucleus	31.73	18.18
Bra032890.1-P	Field mustard	nucleus	30.77	18.08
Bra025229.1-P	Field mustard	nucleus	22.6	17.28
KRG89628	Soybean	plastid	30.77	16.98
KRG89627	Soybean	nucleus	29.81	16.45
GSMUA_AchrUn_...	Banana	nucleus	33.17	10.18
GSMUA_Achr7P23040_001	Banana	nucleus	32.69	9.28
GSMUA_Achr5P27930_001	Banana	nucleus	18.75	6.72
GSMUA_Achr8P03800_001	Banana	nucleus	22.12	5.63
GSMUA_Achr7P00120_001	Banana	nucleus, plastid	24.04	5.61
GSMUA_Achr4P23790_001	Banana	nucleus	22.12	5.17
GSMUA_Achr8P01750_001	Banana	nucleus	21.15	5.13
GSMUA_Achr5P27940_001	Banana	nucleus	0.96	0.91

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr8G18070_001	EnsemblPlants:GSMUA_Achr8P18070_001	EnsemblPlants:GSMUA_Achr8T18070_001	InterPro:IPR003340	InterPro:IPR015300
UniProt:M0TRG0	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI0002955A11	:	:	:	:

Description

Putative B3 domain-containing protein LFL1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G18070_001]

Coordinates

chr8:+:21108970..21110865

Molecular Weight (calculated)

23169.6 Da

IEP (calculated)

4.773

GRAVY (calculated)

-0.207

Length

208 amino acids

Sequence
(BLAST)

001: MSLYQGSVLD LRVPALDPGQ AVGGLRFLLQ KELRNSDVSQ LGRIVLPKKE AEAHLPCLTS REGIMINMDD PDNLQAWTFK YRFWPNNRSR MYVLENTGDY
101: VKKNCLQLGD FILIYKDDSK DRYVIRAKKT GSAELCVAPA DEGIFDSIVP DIVVGSARYS DLFLPLAEGI NIAYGYGLSC AFDEDFPMTF LDESTGSASI
201: ASHKSSDH

Best Arabidopsis Sequence Match ( AT3G26790.1 )
(BLAST)

001: MMVDENVETK ASTLVASVDH GFGSGSGHDH HGLSASVPLL GVNWKKRRMP RQRRSSSSFN LLSFPPPMPP ISHVPTPLPA RKIDPRKLRF LFQKELKNSD
101: VSSLRRMILP KKAAEAHLPA LECKEGIPIR MEDLDGFHVW TFKYRYWPNN NSRMYVLENT GDFVNAHGLQ LGDFIMVYQD LYSNNYVIQA RKASEEEEVD
201: VINLEEDDVY TNLTRIENTV VNDLLLQDFN HHNNNNNNNS NSNSNKCSYY YPVIDDVTTN TESFVYDTTA LTSNDTPLDF LGGHTTTTNN YYSKFGTFDG
301: LGSVENISLD DFY

Arabidopsis Description

FUS3B3 domain-containing transcription factor FUS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.