Factsheet for GSMUA_Achr5P27930_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37982	Soybean	cytosol, nucleus, plastid	6.21	81.82
GSMUA_Achr8P01750_001	Banana	nucleus	79.14	53.56
TraesCS2D01G105300.1	Wheat	nucleus	62.41	39.74
Os07t0679700-01	Rice	nucleus	63.79	38.99
TraesCS2A01G105600.1	Wheat	nucleus	63.79	38.99
EER99914	Sorghum	nucleus	64.31	38.98
TraesCS2B01G122500.1	Wheat	nucleus	63.45	38.74
Zm00001d022440_P005	Maize	plastid	64.31	38.73
Zm00001d037893_P001	Maize	mitochondrion	18.62	38.57
Zm00001d045970_P001	Maize	mitochondrion	17.07	38.37
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.93	35.49
KRH17186	Soybean	nucleus	43.97	35.22
CDY13468	Canola	nucleus	46.55	35.06
HORVU2Hr1G017760.4	Barley	plastid	62.59	35.04
CDX72340	Canola	nucleus	46.38	34.98
Bra023968.1-P	Field mustard	nucleus	46.38	34.94
AT4G32010.1	Thale cress	nucleus	46.55	34.62
Zm00001d007173_P003	Maize	mitochondrion, nucleus	60.0	34.39
VIT_08s0058g01300.t01	Wine grape	nucleus	54.31	34.09
KRH72829	Soybean	nucleus	42.07	33.98
Solyc10g075030.1.1	Tomato	nucleus	50.34	33.22
KRH65426	Soybean	nucleus	51.55	33.04
VIT_06s0004g08100.t01	Wine grape	nucleus	49.48	33.03
Solyc06g082520.2.1	Tomato	nucleus	47.76	32.78
KRH76125	Soybean	nucleus	50.86	32.49
CDY10738	Canola	nucleus	43.28	31.89
Bra018313.1-P	Field mustard	nucleus	43.28	31.77
CDY02066	Canola	nucleus	42.93	31.76
CDX97828	Canola	nucleus	41.72	31.72
Bra021635.1-P	Field mustard	nucleus	42.07	31.52
AT2G30470.1	Thale cress	nucleus	42.41	31.14
CDX84832	Canola	nucleus	42.07	31.08
Bra022801.1-P	Field mustard	nucleus	41.9	31.03
CDY23997	Canola	nucleus	41.72	30.52
CDY29672	Canola	nucleus	41.38	30.46
KRH30646	Soybean	nucleus	47.76	30.41
KRG98129	Soybean	nucleus	47.24	29.3
GSMUA_Achr8P03800_001	Banana	nucleus	39.31	27.91
GSMUA_Achr4P23790_001	Banana	nucleus	40.0	26.1
GSMUA_Achr7P00120_001	Banana	nucleus, plastid	39.14	25.48
GSMUA_Achr3P00120_001	Banana	nucleus	7.93	25.41
Zm00001d029836_P001	Maize	plastid	3.45	22.73
GSMUA_Achr8P18070_001	Banana	nucleus	6.72	18.75
GSMUA_Achr3P32440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	6.38	18.23
GSMUA_AchrUn_...	Banana	nucleus	10.69	9.14
GSMUA_Achr7P23040_001	Banana	nucleus	10.34	8.19
GSMUA_Achr5P27940_001	Banana	nucleus	1.03	2.73
PGSC0003DMT400057590	Potato	nucleus	0.17	0.22

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G27930_001	EnsemblPlants:GSMUA_Achr5P27930_001	EnsemblPlants:GSMUA_Achr5T27930_001	InterPro:IPR003340	InterPro:IPR015300
UniProt:M0T2B7	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR23336	PANTHER:PTHR23336:SF28	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI000295971E	SEG:seg	:	:	:

Description

B3 domain-containing protein Os07g0679700 [Source:GMGC_GENE;Acc:GSMUA_Achr5G27930_001]

Coordinates

chr5:+:28318627..28326307

Molecular Weight (calculated)

64025.0 Da

IEP (calculated)

7.517

GRAVY (calculated)

-0.399

Length

580 amino acids

Sequence
(BLAST)

001: MATRRCMNAA CGVTEPGGEW RRGWGLRSGG FAMLCVKCGL AYEQLAFCDI FHQKESGWRE CSSCGKRLHC GCIASKSSFD LLDIGGVQCI GCMKNPEAPF
101: VRSEVVQNFL SQHHQAVFAL STRCSKENDT DTAVVSRACE MSTTTADSKI DVGAFVKGKG MSNVDVEQSE SEIRSFGHIK WEQQSPDIGI ASFSNRYQGP
201: VVSSQISQLD EKDFVIDKSI SESLAQACLS MSLGNTNQGS NMESCSSAER PLLALPMACS VAEGKDERKS LSFFQQLPRA RFLAKPPKTS NRAFSDASRS
301: ALPYMRVARP PAEGRNQLLP RYWPRITDQE LQQISGDSNS TIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPHISQPEG VPLTIQDTKG KEWHFQFRFW
401: PNNNSRMYVL EGVTPCIQSL QLQAGDTVTF SRIDPAGKLV MGYRKATNTV PLQQDSQISA IANGTFGNET LFSGVNENIS TVSGYSGFLR WHKGGMPNEG
501: LQLQPLQKRS RNIGTKSRRF LMDTEDALEL KLTWEEAQEL LRPPPSAKPS IVTIEDHEVE EYEEPPVFGK KTIFTARSSG

Best Arabidopsis Sequence Match ( AT4G32010.2 )
(BLAST)

001: MESIKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG CAYEQSIFCE VFHAKESGWR ECNSCDKRLH CGCIASRFMM ELLENGGVTC ISCAKKSGLI
101: SMNVSHESNG KDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTHSSLQMK QEESLLPSSL DALRHKTERK ELSAQPNLSI SLGPTLMTSP FHDAAVDDRS
201: KTNSIFQLAP RSRQLLPKPA NSAPIAAGME PSGSLVSQIH VARPPPEGRG KTQLLPRYWP RITDQELLQL SGHSNSKIIP LFEKVLSASD AGRIGRLVLP
301: KACAEAYFPP ISLPEGLPLK IQDIKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRTE PEGKLVMGYR KATNSTATQM FKGSSEPNLN
401: MFSNSLNPGC GDINWSKLEK SEDMAKDNLF LQSSLTSARK RVRNIGTKSK RLLIDSVDVL ELKITWEEAQ ELLRPPQSTK PSIFTLENQD FEEYDEPPVF
501: GKRTLFVSRQ TGEQEQWVQC DACGKWRQLP VDILLPPKWS CSDNLLDPGR SSCSAPDELS PREQDTLVRQ SKEFKRRRLA SSNEKLNQSQ DASALNSLGN
601: AGITTTGEQG EITVAATTKH PRHRAGCSCI VCSQPPSGKG KHKPSCTCTV CEAVKRRFRT LMLRKRNKGE AGQASQQAQS QSECRDETEV ESIPAVELAA
701: GENIDLNSDP GASRVSMMRL LQAAAFPLEA YLKQKAISNT AGEQQSSDMV STEHGSSSAA QETEKDTTNG AHDPVN

Arabidopsis Description

VAL2B3 domain-containing transcription repressor VAL2 [Source:UniProtKB/Swiss-Prot;Acc:Q5CCK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.