Factsheet for VIT_06s0004g08100.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0066g02330.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30470.1	VIT_14s0066g02330.t01	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g082520.2.1	Tomato	nucleus	54.78	56.33
VIT_08s0058g01300.t01	Wine grape	nucleus	56.73	53.35
KRH30646	Soybean	nucleus	52.82	50.38
GSMUA_Achr5P27930_001	Banana	nucleus	33.03	49.48
KRG98129	Soybean	nucleus	52.7	48.98
AT2G30470.1	Thale cress	nucleus	44.3	48.73
CDX97828	Canola	nucleus	42.35	48.23
CDY02066	Canola	nucleus	43.5	48.21
GSMUA_Achr8P01750_001	Banana	nucleus	47.3	47.96
CDY10738	Canola	nucleus	43.38	47.9
Bra018313.1-P	Field mustard	nucleus	43.5	47.85
Bra021635.1-P	Field mustard	nucleus	42.0	47.16
Bra022801.1-P	Field mustard	nucleus	42.35	47.0
CDX84832	Canola	nucleus	42.23	46.75
KRH17186	Soybean	nucleus	38.44	46.13
KRH72829	Soybean	nucleus	37.97	45.96
CDY29672	Canola	nucleus	41.54	45.81
CDY23997	Canola	nucleus	41.66	45.65
TraesCS2D01G105300.1	Wheat	nucleus	46.95	44.79
Os07t0679700-01	Rice	nucleus	47.76	43.73
TraesCS2B01G122500.1	Wheat	nucleus	46.95	42.95
TraesCS2A01G105600.1	Wheat	nucleus	46.84	42.89
EER99914	Sorghum	nucleus	46.95	42.63
Zm00001d022440_P005	Maize	plastid	46.26	41.74
VIT_19s0014g03560.t01	Wine grape	nucleus	11.51	40.16
HORVU2Hr1G017760.4	Barley	plastid	46.38	38.9
VIT_00s0181g00260.t01	Wine grape	nucleus	25.66	38.78
Zm00001d007173_P003	Maize	mitochondrion, nucleus	43.38	37.25
PGSC0003DMT400057590	Potato	nucleus	12.43	23.38
Zm00001d037893_P001	Maize	mitochondrion	6.67	20.71
Zm00001d045970_P001	Maize	mitochondrion	6.1	20.54
VIT_14s0068g01290.t01	Wine grape	nucleus	6.44	19.51
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.33	18.77
VIT_10s0071g00270.t01	Wine grape	nucleus	6.44	18.36
Zm00001d029836_P001	Maize	plastid	1.27	12.5
VIT_07s0005g05400.t01	Wine grape	nucleus	9.32	11.05

Protein Annotations

EntrezGene:100260494	wikigene:100260494	MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	InterPro:B3_DNA-bd
ProteinID:CCB43400	ProteinID:CCB43400.1	InterPro:DNA-bd_pseudobarrel_sf	UniProt:F6GUB3	EMBL:FN594951	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300	EntrezGene:LOC100260494	wikigene:LOC100260494	PFAM:PF02362
PFAM:PF07496	PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336	PANTHER:PTHR23336:SF28	SMART:SM01019
SUPFAM:SSF101936	TIGR:TC56594	UniParc:UPI000210A8D4	ArrayExpress:VIT_06s0004g08100	EnsemblPlantsGene:VIT_06s0004g08100	EnsemblPlants:VIT_06s0004g08100.t01
RefSeq:XP_002276326	RefSeq:XP_002276326.2	InterPro:Znf_CW	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:8848613..8856971

Molecular Weight (calculated)

96180.5 Da

IEP (calculated)

6.644

GRAVY (calculated)

-0.587

Length

869 amino acids

Sequence
(BLAST)

001: MGSRICKNKW CGTTASFEWK KGWTIKSGAV VDLCYKCGSA YENLVFCETF HQEEDGWRQC SLCHKRIHCG CIVSNYQFEA LDYGGVRCSS CLKSPQCHPV
101: RSNDETPNEF GTSTANSINN LQHPCVENRM NCNIVGKDNF MQLGKTMEAD ELNHLLQSQK GDANVSLGQI KQDDSMHAVR EVNTIFPTTS LPSIGPSEFA
201: KSDNSIPMLM GKDVYESLVQ PSLNISLSSS SGPPNFLLPF PGNAVEGMEH SKSAFTFQQG QRTRHILPKP PNSSLSIGSE ANKSMVPEIR IARPPAEGRG
301: RNQLLPRYWP RITDQELQQL SGDLNSTIVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQSEGLPLR VQDAKGTEWT FQFRFWPNNN SRMYVLEGVT
401: PCIQSMQLRA GDTVIFSRID PGNKLVIGCR KASNCVDVQD AQTSALSNGT IYGGSSFSSV TENLSTCAGK MNEDSPQQSL LIPEKKRTRN IGSKNKRLLM
501: HSEDALELKI TWQETQDILR PPPSVEPNIV TIEGYEIEEY TEPPVFGKRS IFTARPSGGQ DQWGQCDNCS KWRKLPIDVF LPLKWTCADN IWDLSRCSCS
601: APDEWNPKES ESLSRLGKDY KRQKSMESHK LAQEGEPTGL DALANAAVLE ENGGDSGEPS AEATTRHPRH RPGCSCIVCI QPPSGKGKHK STCICNVCMT
701: VKRRFRTLML RKKKRQSEHE AESSQIKHQI HPINESEISG MVRNVSLQRN HSDGENNQSK IQEEVVAETG TGQIDLNCRP DNEEDLLPGV TGVSMTSLVQ
801: AASHPLDFYL KQTGLTSLIS DQPMSSNSRP LPQVTGGEDG HLTDERSLSP LIWEHGSGAG EGYHKPDLD

Best Arabidopsis Sequence Match ( AT2G30470.1 )
(BLAST)

001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS

Arabidopsis Description

VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.