Factsheet for AT2G30470.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84832	Canola	nucleus	74.81	75.29
CDY02066	Canola	nucleus	74.43	75.0
Bra022801.1-P	Field mustard	nucleus	74.3	74.97
CDY10738	Canola	nucleus	74.56	74.84
CDX97828	Canola	nucleus	71.65	74.18
Bra018313.1-P	Field mustard	nucleus	74.05	74.05
Bra021635.1-P	Field mustard	nucleus	72.15	73.64
CDY23997	Canola	nucleus	73.29	73.01
CDY29672	Canola	nucleus	71.77	71.95
Solyc06g082520.2.1	Tomato	nucleus	47.97	44.85
VIT_06s0004g08100.t01	Wine grape	nucleus	48.73	44.3
KRH30646	Soybean	nucleus	51.01	44.24
AT4G32010.1	Thale cress	nucleus	43.29	43.85
KRG98129	Soybean	nucleus	51.27	43.32
KRH72829	Soybean	nucleus	38.73	42.62
GSMUA_Achr5P27930_001	Banana	nucleus	31.14	42.41
GSMUA_Achr8P01750_001	Banana	nucleus	44.81	41.31
KRH17186	Soybean	nucleus	37.47	40.88
TraesCS2D01G105300.1	Wheat	nucleus	44.05	38.2
Os07t0679700-01	Rice	nucleus	44.94	37.41
TraesCS2A01G105600.1	Wheat	nucleus	44.68	37.2
EER99914	Sorghum	nucleus	44.81	36.99
TraesCS2B01G122500.1	Wheat	nucleus	44.3	36.84
Zm00001d022440_P005	Maize	plastid	44.05	36.14
HORVU2Hr1G017760.4	Barley	plastid	43.67	33.3
Zm00001d007173_P003	Maize	mitochondrion, nucleus	42.03	32.81
AT4G21550.1	Thale cress	nucleus, plastid	27.97	30.91
PGSC0003DMT400057590	Potato	nucleus	11.77	20.13
AT3G26790.1	Thale cress	nucleus	7.97	20.13
Zm00001d037893_P001	Maize	mitochondrion	6.46	18.21
Zm00001d045970_P001	Maize	mitochondrion	5.82	17.83
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.46	17.41
AT1G28300.1	Thale cress	nucleus	7.09	15.43
AT3G24650.1	Thale cress	nucleus	9.75	10.69
Zm00001d029836_P001	Maize	plastid	0.63	5.68

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	EntrezGene:817597	ProteinID:AAB63089.1	EMBL:AB206553
ProteinID:AEC08392.1	ArrayExpress:AT2G30470	EnsemblPlantsGene:AT2G30470	RefSeq:AT2G30470	TAIR:AT2G30470	RefSeq:AT2G30470-TAIR-G
EnsemblPlants:AT2G30470.1	TAIR:AT2G30470.1	EMBL:AY062492	Unigene:At.27438	InterPro:B3_DNA-bd	ncoils:Coil
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009719	GO:GO:0009737	GO:GO:0009744	GO:GO:0009987
GO:GO:0045892	GO:GO:0046872	Symbol:HSI2	InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300
RefSeq:NP_850146.1	PFAM:PF02362	PFAM:PF07496	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50863	PFscan:PS51050
PANTHER:PTHR23336	PANTHER:PTHR23336:SF28	UniProt:Q8W4L5	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI00000A43C2
InterPro:Znf_CW	SEG:seg	:	:	:	:

Description

VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]

Coordinates

chr2:-:12980428..12985277

Molecular Weight (calculated)

87006.5 Da

IEP (calculated)

7.904

GRAVY (calculated)

-0.599

Length

790 amino acids

Sequence
(BLAST)

001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.