Factsheet for AT1G28300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66878	Canola	nucleus	69.42	70.0
CDX94608	Canola	nucleus	66.94	69.63
CDY15679	Canola	nucleus	66.94	69.63
CDY46611	Canola	nucleus	68.32	69.08
Bra030087.1-P	Field mustard	nucleus	65.29	68.9
Bra032890.1-P	Field mustard	nucleus	66.67	68.36
GSMUA_Achr8P18070_001	Banana	nucleus	18.18	31.73
GSMUA_Achr3P32440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	17.63	31.53
TraesCS3D01G249100.1	Wheat	plastid	20.11	24.25
TraesCS3B01G278000.1	Wheat	plastid	20.11	24.17
AT3G26790.1	Thale cress	nucleus	20.39	23.64
Os01t0713600-01	Rice	plastid	18.73	23.53
KRG89628	Soybean	plastid	21.21	20.42
KRG89627	Soybean	nucleus	20.66	19.89
TraesCS3A01G249100.2	Wheat	nucleus	20.39	19.07
Zm00001d011712_P001	Maize	mitochondrion	20.39	18.88
KXG33236	Sorghum	mitochondrion, nucleus	20.39	18.88
HORVU3Hr1G067350.2	Barley	nucleus	18.73	18.33
AT3G24650.1	Thale cress	nucleus	25.34	12.78
AT4G21550.1	Thale cress	nucleus, plastid	14.05	7.13
AT2G30470.1	Thale cress	nucleus	15.43	7.09
AT4G32010.1	Thale cress	nucleus	15.15	7.05

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	EntrezGene:839724	ProteinID:AAF98425.1	ProteinID:AAL12005.1	ProteinID:AEE30945.1
EMBL:AF400123	EMBL:AJ630496	ArrayExpress:AT1G28300	EnsemblPlantsGene:AT1G28300	RefSeq:AT1G28300	TAIR:AT1G28300
RefSeq:AT1G28300-TAIR-G	EnsemblPlants:AT1G28300.1	TAIR:AT1G28300.1	EMBL:AY568668	Unigene:At.26290	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	EMBL:DQ446296	EMBL:DQ652865	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0010262	GO:GO:0010344	GO:GO:0010431	GO:GO:0010601	GO:GO:0045893	InterPro:IPR003340
InterPro:IPR015300	Symbol:LEC2	RefSeq:NP_564304.1	PFAM:PF02362	PO:PO:0000011	PO:PO:0001078
PO:PO:0001185	PO:PO:0004507	PO:PO:0007131	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1
UniProt:Q1PFR7	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0000162EF6	SEG:seg	:

Description

LEC2B3 domain-containing transcription factor LEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFR7]

Coordinates

chr1:-:9896867..9899876

Molecular Weight (calculated)

41710.7 Da

IEP (calculated)

5.040

GRAVY (calculated)

-0.818

Length

363 amino acids

Sequence
(BLAST)

001: MDNFLPFPSS NANSVQELSM DPNNNRSHFT TVPTYDHHQA QPHHFLPPFS YPVEQMAAVM NPQPVYLSEC YPQIPVTQTG SEFGSLVGNP CLWQERGGFL
101: DPRMTKMARI NRKNAMMRSR NNSSPNSSPS ELVDSKRQLM MLNLKNNVQI SDKKDSYQQS TFDNKKLRVL CEKELKNSDV GSLGRIVLPK RDAEANLPKL
201: SDKEGIVVQM RDVFSMQSWS FKYKFWSNNK SRMYVLENTG EFVKQNGAEI GDFLTIYEDE SKNLYFAMNG NSGKQNEGRE NESRERNHYE EAMLDYIPRD
301: EEEASIAMLI GNLNDHYPIP NDLMDLTTDL QHHQATSSSM PPEDHAYVGS SDDQVSFNDF EWW

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.