Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46611 | Canola | nucleus | 95.56 | 95.82 |
| CDY15679 | Canola | nucleus | 74.72 | 77.08 |
| CDX94608 | Canola | nucleus | 74.72 | 77.08 |
| AT1G28300.1 | Thale cress | nucleus | 70.0 | 69.42 |
| GSMUA_Achr3P32440_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 18.61 | 33.0 |
| GSMUA_Achr8P18070_001 | Banana | nucleus | 18.61 | 32.21 |
| TraesCS3D01G249100.1 | Wheat | plastid | 21.94 | 26.25 |
| TraesCS3B01G278000.1 | Wheat | plastid | 21.94 | 26.16 |
| Os01t0713600-01 | Rice | plastid | 20.0 | 24.91 |
| CDY13657 | Canola | nucleus | 21.11 | 24.13 |
| CDY53003 | Canola | nucleus | 20.83 | 23.89 |
| CDY34212 | Canola | nucleus | 19.44 | 22.73 |
| CDY28525 | Canola | nucleus | 19.44 | 22.65 |
| TraesCS3A01G249100.2 | Wheat | nucleus | 22.22 | 20.62 |
| HORVU3Hr1G067350.2 | Barley | nucleus | 20.56 | 19.95 |
| KXG33236 | Sorghum | mitochondrion, nucleus | 21.39 | 19.64 |
| KRG89628 | Soybean | plastid | 20.56 | 19.63 |
| Zm00001d011712_P001 | Maize | mitochondrion | 21.11 | 19.39 |
| KRG89627 | Soybean | nucleus | 20.0 | 19.1 |
| CDY15121 | Canola | nucleus | 25.56 | 13.69 |
| CDX93029 | Canola | nucleus | 25.56 | 12.81 |
| CDX79071 | Canola | nucleus | 13.61 | 6.79 |
| CDX82834 | Canola | nucleus | 13.61 | 6.78 |
| CDY02066 | Canola | nucleus | 14.72 | 6.76 |
| CDX84832 | Canola | nucleus | 14.72 | 6.75 |
| CDY10738 | Canola | nucleus | 14.72 | 6.73 |
| CDY29672 | Canola | nucleus | 14.72 | 6.73 |
| CDX97828 | Canola | nucleus | 14.17 | 6.68 |
| CDX72340 | Canola | nucleus | 14.17 | 6.63 |
| CDY13468 | Canola | nucleus | 14.17 | 6.62 |
| CDY23997 | Canola | nucleus | 14.44 | 6.56 |
| CDX68809 | Canola | cytosol | 0.83 | 2.29 |
Protein Annotations
| MapMan:15.5.5.5 | Gene3D:2.40.330.10 | GO:A0A078JH12 | UniProt:A0A078JH12 | InterPro:B3_DNA-bd | EnsemblPlants:CDY66878 |
| ProteinID:CDY66878 | ProteinID:CDY66878.1 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00056765001 | InterPro:IPR003340 | InterPro:IPR015300 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF1 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EE5BEC | SEG:seg | : |
Description
BnaC05g50460DBnaC05g50460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JH12]
Coordinates
chrLK035547:+:7309..10975
Molecular Weight (calculated)
41212.1 Da
IEP (calculated)
6.054
GRAVY (calculated)
-0.739
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNFLPFSSS NANSVEELSM DLNNNRSRLS TFPTYDHHHQ AQHHSLQPYS YVACPVDQTA AMNPQISVIQ TGSEFGSLVC NPGFRQARGG FLDPHTAKMA
101: RINRKKAMIR SRNNSSPNSS SNELVGSRRQ VVLTMKNNAE IAARKDLYRY SSFDNKKLRV LLVKHLKNSD VGSLGRIVLP KREAEGNLPE LSTKEGMIVE
201: MRDADSMQNW SFKYKFWSNN KSRMYVLENT GEFVAEKRVE IGDFLTIYED ESKNLYFSIR KHADKPNEGR EDESMEANDM NFYEDIAFDF IPKDEDEDSI
301: AMLIGNLNDH YPNPNNLMDL PIDLHQHHQA TSSLPPVDYM TNPQYSGSSN DHMSFNDFVW
101: RINRKKAMIR SRNNSSPNSS SNELVGSRRQ VVLTMKNNAE IAARKDLYRY SSFDNKKLRV LLVKHLKNSD VGSLGRIVLP KREAEGNLPE LSTKEGMIVE
201: MRDADSMQNW SFKYKFWSNN KSRMYVLENT GEFVAEKRVE IGDFLTIYED ESKNLYFSIR KHADKPNEGR EDESMEANDM NFYEDIAFDF IPKDEDEDSI
301: AMLIGNLNDH YPNPNNLMDL PIDLHQHHQA TSSLPPVDYM TNPQYSGSSN DHMSFNDFVW
001: MDNFLPFPSS NANSVQELSM DPNNNRSHFT TVPTYDHHQA QPHHFLPPFS YPVEQMAAVM NPQPVYLSEC YPQIPVTQTG SEFGSLVGNP CLWQERGGFL
101: DPRMTKMARI NRKNAMMRSR NNSSPNSSPS ELVDSKRQLM MLNLKNNVQI SDKKDSYQQS TFDNKKLRVL CEKELKNSDV GSLGRIVLPK RDAEANLPKL
201: SDKEGIVVQM RDVFSMQSWS FKYKFWSNNK SRMYVLENTG EFVKQNGAEI GDFLTIYEDE SKNLYFAMNG NSGKQNEGRE NESRERNHYE EAMLDYIPRD
301: EEEASIAMLI GNLNDHYPIP NDLMDLTTDL QHHQATSSSM PPEDHAYVGS SDDQVSFNDF EWW
101: DPRMTKMARI NRKNAMMRSR NNSSPNSSPS ELVDSKRQLM MLNLKNNVQI SDKKDSYQQS TFDNKKLRVL CEKELKNSDV GSLGRIVLPK RDAEANLPKL
201: SDKEGIVVQM RDVFSMQSWS FKYKFWSNNK SRMYVLENTG EFVKQNGAEI GDFLTIYEDE SKNLYFAMNG NSGKQNEGRE NESRERNHYE EAMLDYIPRD
301: EEEASIAMLI GNLNDHYPIP NDLMDLTTDL QHHQATSSSM PPEDHAYVGS SDDQVSFNDF EWW
Arabidopsis Description
LEC2B3 domain-containing transcription factor LEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFR7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.