CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79071	Canola	nucleus	94.88	95.01
AT4G21550.1	Thale cress	nucleus, plastid	63.21	63.92
VIT_00s0181g00260.t01	Wine grape	nucleus	30.01	37.74
KRH21568	Soybean	nucleus	40.8	33.56
KRH10760	Soybean	nucleus	40.66	33.49
GSMUA_Achr8P03800_001	Banana	nucleus	35.96	31.82
CDX68809	Canola	cytosol	5.67	31.3
GSMUA_Achr4P23790_001	Banana	nucleus	36.93	30.03
GSMUA_Achr7P00120_001	Banana	nucleus, plastid	36.93	29.97
CDX72340	Canola	nucleus	31.26	29.39
CDY13468	Canola	nucleus	31.26	29.35
CDY10738	Canola	nucleus	31.67	29.1
CDX97828	Canola	nucleus	30.57	28.96
CDY02066	Canola	nucleus	31.12	28.7
CDX84832	Canola	nucleus	30.71	28.28
CDY29672	Canola	nucleus	30.29	27.79
Os07t0563300-01	Rice	nucleus	36.38	27.54
CDY23997	Canola	nucleus	30.01	27.36
Zm00001d006597_P003	Maize	plastid	35.96	26.94
KXG36480	Sorghum	nucleus	35.82	26.76
Zm00001d021790_P010	Maize	nucleus	35.68	26.68
TraesCS2A01G204300.1	Wheat	plastid	34.99	26.24
TraesCS2B01G231800.1	Wheat	plastid	34.72	26.15
TraesCS2D01G211600.2	Wheat	plastid	34.85	26.14
HORVU2Hr1G040410.4	Barley	nucleus, plastid	34.85	25.79
Solyc02g079020.2.1	Tomato	nucleus	36.93	25.6
HORVU2Hr1G040400.1	Barley	nucleus	14.8	25.36
CDY34212	Canola	nucleus	8.02	18.83
CDY28525	Canola	nucleus	8.02	18.77
CDY13657	Canola	nucleus	8.02	18.41
CDY53003	Canola	nucleus	7.88	18.15
CDY15679	Canola	nucleus	6.64	13.75
CDY66878	Canola	nucleus	6.78	13.61
CDX94608	Canola	nucleus	6.5	13.47
CDY46611	Canola	nucleus	6.64	13.37
PGSC0003DMT400057590	Potato	nucleus	8.3	12.99
CDY15121	Canola	nucleus	10.24	11.01
CDX93029	Canola	nucleus	10.79	10.86

Protein Annotations

EnsemblPlants:CDX82834	EnsemblPlantsGene:GSBRNA2T00138182001	Gene3D:2.40.330.10	GO:A0A078D3K4	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	InterPro:IPR003340	InterPro:IPR015300
PANTHER:PTHR23336	PANTHER:PTHR23336:SF10	PFAM:PF02362	PFscan:PS50863	ProteinID:CDX82834	ProteinID:CDX82834.1
SEG:seg	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EE7150	MapMan:15.5.5.4	:

Description

BnaC01g12840D

Coordinates

chrLK031830:+:614062..619345

Molecular Weight (calculated)

80563.7 Da

IEP (calculated)

8.209

GRAVY (calculated)

-0.740

Length

723 amino acids

Sequence
(BLAST)

001: MLPFPSSSSM TPSSYSARFC FNRECPDFNR ECYRPGWRLR NGDFADLCNR CASAYEQGRF CDIFHQRASG WRCCESCGKR IHCGCIVSAP AFMLLDAGGI
101: ECLTCARKKV SVGPNFRPPP PSFLFQSPIS EKFQDLSIDW NSSTRSYRPP NLSGPSIRQS DRGDCYEFNQ PTSKDKATAY STEKHRGMND LMGKLMSVNS
201: NNHTNSILYN QKAGPNCKVP TCPNVNAAYP PLISLKEGPL VGAQRAFPVT TPVETNGHLG LGGRYLWHKA NSSPLSHLHN DLNNGADSPL ESKNWNFGIH
301: LDTPGKYQVV PRYSPKIPYK NQVLQNLPNE SVSVVTPLFE KILSVSDAGR VGRMVLPKKC AEAFLPQISQ TDGVPLTVHD STGKEWTFQF RFWVNNNSRM
401: YFLEGITPCI QSMQLQAGDT VIFSRADPEK KLIMGFRKAS VAQSSVQETE LNNNRESCTN GDAEPIDIHP PNGKKKSSMT TTRSKRQKVE KGELSELKLT
501: WEEAQGFILP SPNLTPSIIT IEGIEFEEYE DAPIIGKPNT GFGSTCSANK GLLAEQDDEE AKDEAEGLLM SPKSTSKHPR HRNGCACIVC LQSPSGSSPK
601: HGRRCSCTVC DTVRRRRETL LQRKKKQQQS EIENKAHKEM ESPNSDEERH QSVNNSGTTS KDYERHASPP SKAQIDLNFQ PEKDEESPLP RSKTTTKDKS
701: LHHDEARSSS SAHNKLHVDF ADS

Best Arabidopsis Sequence Match ( AT4G21550.1 )
(BLAST)

001: MLSSSSMSSS SLSARFCFNH ECFEFKLDHC RPGWRLRSGD FVDLCDRCAS AYEQGKFCDV FHQRASGWRC CESCGKRIHC GCIASASAYT LMDAGGIECL
101: ACARKKFALG PNFSPSPSFL FQSPISEKFK DLSINWSSST RSNQISYQPP SCLDPSVLQF DFRNRGGNNE FSQPASKERV TACTMEKKRG MNDMIGKLMS
201: ENSKHYRVSP FPNVNVYHPL ISLKEGPCGT QLAFPVPITT PIEKTGHSRL DGSNLWHTRN SSPLSRLHND LNGGADSPFE SKSRNVMAHL ETPGKYQVVP
301: RFWPKVSYKN QVLQNQSKES ESVVTPLFEK ILSATDTGKR LVLPKKYAEA FLPQLSHTKG VPLTVQDPMG KEWRFQFRFW PSSKGRIYVL EGVTPFIQTL
401: QLQAGDTVIF SRLDPERKLI LGFRKASITQ SSDQADPADM HSPFEVKKSA YITKETPGVE CSSGKKKSSM MITRSKRQKV EKGDDNLLKL TWEEAQGFLL
501: PPPNLTPSRV VIEDYEFEEY EEAPIIGKPT DVAGFRSTCT EVEGLLISPT TTKHPRHRDG CTCIICIQSP SGIGPKHDRC CSCAVCDTNK RRRRSLLLRR
601: EKKQMEKEDN ARKLLEQLNS DNGLHQSANN SENHERHASP LKVQLDLNFK PEKDEESLPG SNKTTKSETL PHDDTVKSSF TSPSSSSAHS QNNKEDEGKL
701: KTTTEIADTT TTSSM

Arabidopsis Description

VAL3VP1/ABI3-like 3 [Source:TAIR;Acc:AT4G21550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.