Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72340 | Canola | nucleus | 63.36 | 10.79 |
| CDY13468 | Canola | nucleus | 63.36 | 10.78 |
| CDY02066 | Canola | nucleus | 47.33 | 7.91 |
| CDX97828 | Canola | nucleus | 45.8 | 7.86 |
| CDY10738 | Canola | nucleus | 46.56 | 7.75 |
| CDX84832 | Canola | nucleus | 45.8 | 7.64 |
| CDY29672 | Canola | nucleus | 45.8 | 7.61 |
| CDY23997 | Canola | nucleus | 45.8 | 7.57 |
| CDX79071 | Canola | nucleus | 33.59 | 6.09 |
| CDX82834 | Canola | nucleus | 31.3 | 5.67 |
| VIT_19s0014g03560.t01 | Wine grape | nucleus | 8.4 | 4.42 |
| CDY34212 | Canola | nucleus | 3.82 | 1.62 |
| CDY28525 | Canola | nucleus | 3.82 | 1.62 |
| PGSC0003DMT400064355 | Potato | plastid | 1.53 | 1.2 |
| CDY53003 | Canola | nucleus | 2.29 | 0.96 |
| CDY13657 | Canola | nucleus | 2.29 | 0.95 |
| CDY15679 | Canola | nucleus | 2.29 | 0.86 |
| CDX94608 | Canola | nucleus | 2.29 | 0.86 |
| CDY46611 | Canola | nucleus | 2.29 | 0.84 |
| CDX93029 | Canola | nucleus | 4.58 | 0.84 |
| CDY66878 | Canola | nucleus | 2.29 | 0.83 |
| CDY15121 | Canola | nucleus | 3.82 | 0.74 |
Protein Annotations
| EnsemblPlants:CDX68809 | EnsemblPlantsGene:GSBRNA2T00130528001 | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF28 | ProteinID:CDX68809 | ProteinID:CDX68809.1 |
| UniParc:UPI0004EDF01F | MapMan:35.1 | : | : | : | : |
Description
BnaC01g06440D
Coordinates
chrLK031789:+:1392906..1393379
Molecular Weight (calculated)
14480.4 Da
IEP (calculated)
10.545
GRAVY (calculated)
-0.700
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSSSGLRVL HLMNSPQEKR NVCTAEQRVQ KEETGIIKRK EASALDTLAN AAITTTVEQR DTEVAASTKH PRHRAGCSCI VCSQPPSGKG KHKPSCTCTV
101: CEAVKRRFKT LMLRKRNREE AGQASQQALS R
101: CEAVKRRFKT LMLRKRNREE AGQASQQALS R
001: MESIKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG CAYEQSIFCE VFHAKESGWR ECNSCDKRLH CGCIASRFMM ELLENGGVTC ISCAKKSGLI
101: SMNVSHESNG KDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTHSSLQMK QEESLLPSSL DALRHKTERK ELSAQPNLSI SLGPTLMTSP FHDAAVDDRS
201: KTNSIFQLAP RSRQLLPKPA NSAPIAAGME PSGSLVSQIH VARPPPEGRG KTQLLPRYWP RITDQELLQL SGHSNSKIIP LFEKVLSASD AGRIGRLVLP
301: KACAEAYFPP ISLPEGLPLK IQDIKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRTE PEGKLVMGYR KATNSTATQM FKGSSEPNLN
401: MFSNSLNPGC GDINWSKLEK SEDMAKDNLF LQSSLTSARK RVRNIGTKSK RLLIDSVDVL ELKITWEEAQ ELLRPPQSTK PSIFTLENQD FEEYDEPPVF
501: GKRTLFVSRQ TGEQEQWVQC DACGKWRQLP VDILLPPKWS CSDNLLDPGR SSCSAPDELS PREQDTLVRQ SKEFKRRRLA SSNEKLNQSQ DASALNSLGN
601: AGITTTGEQG EITVAATTKH PRHRAGCSCI VCSQPPSGKG KHKPSCTCTV CEAVKRRFRT LMLRKRNKGE AGQASQQAQS QSECRDETEV ESIPAVELAA
701: GENIDLNSDP GASRVSMMRL LQAAAFPLEA YLKQKAISNT AGEQQSSDMV STEHGSSSAA QETEKDTTNG AHDPVN
101: SMNVSHESNG KDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTHSSLQMK QEESLLPSSL DALRHKTERK ELSAQPNLSI SLGPTLMTSP FHDAAVDDRS
201: KTNSIFQLAP RSRQLLPKPA NSAPIAAGME PSGSLVSQIH VARPPPEGRG KTQLLPRYWP RITDQELLQL SGHSNSKIIP LFEKVLSASD AGRIGRLVLP
301: KACAEAYFPP ISLPEGLPLK IQDIKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRTE PEGKLVMGYR KATNSTATQM FKGSSEPNLN
401: MFSNSLNPGC GDINWSKLEK SEDMAKDNLF LQSSLTSARK RVRNIGTKSK RLLIDSVDVL ELKITWEEAQ ELLRPPQSTK PSIFTLENQD FEEYDEPPVF
501: GKRTLFVSRQ TGEQEQWVQC DACGKWRQLP VDILLPPKWS CSDNLLDPGR SSCSAPDELS PREQDTLVRQ SKEFKRRRLA SSNEKLNQSQ DASALNSLGN
601: AGITTTGEQG EITVAATTKH PRHRAGCSCI VCSQPPSGKG KHKPSCTCTV CEAVKRRFRT LMLRKRNKGE AGQASQQAQS QSECRDETEV ESIPAVELAA
701: GENIDLNSDP GASRVSMMRL LQAAAFPLEA YLKQKAISNT AGEQQSSDMV STEHGSSSAA QETEKDTTNG AHDPVN
Arabidopsis Description
VAL2B3 domain-containing transcription repressor VAL2 [Source:UniProtKB/Swiss-Prot;Acc:Q5CCK4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.