CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY28683

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30470.1	CDY28683	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021635.1-P	Field mustard	nucleus	94.67	96.38
CDX97828	Canola	nucleus	88.83	91.74
CDX84832	Canola	nucleus	76.65	76.94
CDY02066	Canola	nucleus	76.14	76.53
CDY10738	Canola	nucleus	76.27	76.37
CDY23997	Canola	nucleus	76.14	75.66
AT2G30470.1	Thale cress	nucleus	71.95	71.77
CDX68809	Canola	cytosol	7.61	45.8
CDX72340	Canola	nucleus	44.04	45.12
CDY13468	Canola	nucleus	43.91	44.94
Solyc06g082520.2.1	Tomato	nucleus	45.94	42.84
KRH72829	Soybean	nucleus	38.2	41.92
KRH30646	Soybean	nucleus	48.22	41.71
VIT_06s0004g08100.t01	Wine grape	nucleus	45.81	41.54
GSMUA_Achr5P27930_001	Banana	nucleus	30.46	41.38
KRH17186	Soybean	nucleus	37.56	40.88
KRG98129	Soybean	nucleus	48.35	40.75
GSMUA_Achr8P01750_001	Banana	nucleus	43.53	40.02
TraesCS2D01G105300.1	Wheat	nucleus	44.04	38.09
TraesCS2A01G105600.1	Wheat	nucleus	45.56	37.83
Os07t0679700-01	Rice	nucleus	45.56	37.83
EER99914	Sorghum	nucleus	45.56	37.51
TraesCS2B01G122500.1	Wheat	nucleus	45.18	37.47
Zm00001d022440_P005	Maize	plastid	45.05	36.86
HORVU2Hr1G017760.4	Barley	plastid	44.54	33.88
Zm00001d007173_P003	Maize	mitochondrion, nucleus	42.39	33.0
CDX79071	Canola	nucleus	27.92	30.47
CDX82834	Canola	nucleus	27.79	30.29
CDY28525	Canola	nucleus	8.63	22.01
CDY34212	Canola	nucleus	8.5	21.75
CDY13657	Canola	nucleus	8.63	21.59
CDY53003	Canola	nucleus	8.5	21.34
PGSC0003DMT400057590	Potato	nucleus	12.31	21.0
Zm00001d037893_P001	Maize	mitochondrion	6.35	17.86
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.47	17.41
Zm00001d045970_P001	Maize	mitochondrion	5.58	17.05
CDY66878	Canola	nucleus	6.73	14.72
CDY15679	Canola	nucleus	6.47	14.61
CDX94608	Canola	nucleus	6.47	14.61
CDY46611	Canola	nucleus	6.35	13.93
CDY15121	Canola	nucleus	9.64	11.31
CDX93029	Canola	nucleus	10.15	11.14
Zm00001d029836_P001	Maize	plastid	0.63	5.68

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	GO:A0A078GWV7	UniProt:A0A078GWV7	InterPro:B3_DNA-bd
EnsemblPlants:CDY29672	ProteinID:CDY29672	ProteinID:CDY29672.1	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00043437001	InterPro:IPR003340	InterPro:IPR011124
InterPro:IPR015300	PFAM:PF02362	PFAM:PF07496	PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336
PANTHER:PTHR23336:SF28	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EF2880	InterPro:Znf_CW	SEG:seg

Description

BnaA04g17550DBnaA04g17550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWV7]

Coordinates

chrLK032241:+:223385..228392

Molecular Weight (calculated)

86685.5 Da

IEP (calculated)

7.163

GRAVY (calculated)

-0.597

Length

788 amino acids

Sequence
(BLAST)

001: MFQVKTGSKM CMNASCGSTS TVEWKKGWPL RSGALADLCF RCGSAYETSL FCETFHLDQS GWRECYLCNK RLHCGCIASK LVVEFMDFGG VGCTTCTNCH
101: QPNLNNRGEN PGLFSRLPMN RQHTNGESGM NVGKADLFSQ PLVQGDDKRE EFMPHRGFSN LMKPDNATTT GYRHDANGTH ESSSTPSQPP SLNMPMAALP
201: YSLNFATATK KLMDAASQSH TVQSSASGIL QTPSKSVPGT PSGPGTSKSA QARIGRPPNE GRGRSHLLPR YWPKYTDKEL QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGK EWTFQFRFWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GFRKAAHTGV
401: IQVLLHSYLD PIFINRGVVL PTDTSSSGVT ETPTSINASS CPAQTPEELK GLPEHLNSNH GGSSLKKSEV NGVKDKKRTR TVGAKHKRML WRSEEAMEVR
501: ITWEETQDLI SPSPGEKPTV VVIEEHEFEE FNEPPVFGKR TIVTSRPSGE QERWGSCDDC SKWRRLPVDA LLPAKWTCSD NVWDESRCSC SAPEESLKEL
601: ENVLRMSKEY KKRRSGVSQT VRTEEELTGL DALASAAALG DTLGEEEEPA TTTRHPRHRV GCSCIVCIQP PSGKGRHNSS CLCTVCSTVK RRFKTLMMRR
701: KKKQLEREEI EAAATAADQE NKEEGKIDLN SDPCNRGEVE AVGVEEKVES EKREAGECLG VAQADDVVGV TELEGEGEKV GEESKSSS

Best Arabidopsis Sequence Match ( AT2G30470.1 )
(BLAST)

001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS

Arabidopsis Description

VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.