CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15679	Canola	nucleus	97.71	97.71
CDY66878	Canola	nucleus	77.08	74.72
CDY46611	Canola	nucleus	76.22	74.09
AT1G28300.1	Thale cress	nucleus	69.63	66.94
GSMUA_Achr8P18070_001	Banana	nucleus	19.48	32.69
GSMUA_Achr3P32440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	17.77	30.54
TraesCS3D01G249100.1	Wheat	plastid	21.49	24.92
TraesCS3B01G278000.1	Wheat	plastid	21.49	24.83
Os01t0713600-01	Rice	plastid	19.77	23.88
CDY34212	Canola	nucleus	19.2	21.75
CDY28525	Canola	nucleus	19.2	21.68
CDY13657	Canola	nucleus	19.48	21.59
CDY53003	Canola	nucleus	19.2	21.34
KRG89628	Soybean	plastid	21.78	20.16
TraesCS3A01G249100.2	Wheat	nucleus	21.78	19.59
HORVU3Hr1G067350.2	Barley	nucleus	20.63	19.41
KRG89627	Soybean	nucleus	20.63	19.1
KXG33236	Sorghum	mitochondrion, nucleus	21.2	18.88
Zm00001d011712_P001	Maize	mitochondrion	20.92	18.62
CDY15121	Canola	nucleus	26.36	13.69
CDX93029	Canola	nucleus	26.36	12.81
CDX84832	Canola	nucleus	15.19	6.75
CDY13468	Canola	nucleus	14.61	6.62
CDY10738	Canola	nucleus	14.9	6.61
CDY23997	Canola	nucleus	14.9	6.56
CDX79071	Canola	nucleus	13.47	6.51
CDY02066	Canola	nucleus	14.61	6.51
CDX72340	Canola	nucleus	14.33	6.5
CDX82834	Canola	nucleus	13.47	6.5
CDY29672	Canola	nucleus	14.61	6.47
CDX97828	Canola	nucleus	14.04	6.42
CDX68809	Canola	cytosol	0.86	2.29

Protein Annotations

EnsemblPlants:CDX94608	EnsemblPlantsGene:GSBRNA2T00157904001	Gene3D:2.40.330.10	GO:A0A078E5B7	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	InterPro:IPR003340	InterPro:IPR015300
PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	PFAM:PF02362	PFscan:PS50863	ProteinID:CDX94608	ProteinID:CDX94608.1
SEG:seg	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EF401F	MapMan:15.5.5.5	:

Description

BnaC07g10500D

Coordinates

chrLK031883:-:179197..183501

Molecular Weight (calculated)

40000.2 Da

IEP (calculated)

6.293

GRAVY (calculated)

-0.681

Length

349 amino acids

Sequence
(BLAST)

001: MDNFLPFSSS NANSVQELSM DLNKNRSHFS MAQPQHLLPP YSYVACPVLD QTGAMNHQPL HSSDAFPQIP VVQTGGEFGY LVCKPGVRQE RGGFLDPHST
101: KMARINRKKA MIRSRNNSNL NSSSNELVDS RRQVALTMKN NAEIAARKDF YRFSSFDNKK LRVLLVKHLK NSDVGSLGRI VLPKREAEGN LPELSDKEGM
201: VLQMRDVDSV QSWSFKYKYW SNNKSRMYVL ENTGEFVKKN GVLMGDYLTI YEDESKNLYF SIRKHPHKQN DGREDESMEV IEMNFYEDIM FDYIPNGEDD
301: SIAMLLGNLN EHYPYPNDIM DLTVDLDQHQ QATSSSPPAD HMSSNDFLW

Best Arabidopsis Sequence Match ( AT1G28300.1 )
(BLAST)

001: MDNFLPFPSS NANSVQELSM DPNNNRSHFT TVPTYDHHQA QPHHFLPPFS YPVEQMAAVM NPQPVYLSEC YPQIPVTQTG SEFGSLVGNP CLWQERGGFL
101: DPRMTKMARI NRKNAMMRSR NNSSPNSSPS ELVDSKRQLM MLNLKNNVQI SDKKDSYQQS TFDNKKLRVL CEKELKNSDV GSLGRIVLPK RDAEANLPKL
201: SDKEGIVVQM RDVFSMQSWS FKYKFWSNNK SRMYVLENTG EFVKQNGAEI GDFLTIYEDE SKNLYFAMNG NSGKQNEGRE NESRERNHYE EAMLDYIPRD
301: EEEASIAMLI GNLNDHYPIP NDLMDLTTDL QHHQATSSSM PPEDHAYVGS SDDQVSFNDF EWW

Arabidopsis Description

LEC2B3 domain-containing transcription factor LEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.