CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY28683

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30470.1	CDY28683	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018313.1-P	Field mustard	nucleus	98.6	98.23
CDY02066	Canola	nucleus	96.32	96.68
CDX84832	Canola	nucleus	81.83	82.04
CDY23997	Canola	nucleus	80.81	80.2
CDX97828	Canola	nucleus	77.13	79.55
CDY29672	Canola	nucleus	76.37	76.27
AT2G30470.1	Thale cress	nucleus	74.84	74.56
CDX72340	Canola	nucleus	45.87	46.94
CDY13468	Canola	nucleus	45.74	46.75
CDX68809	Canola	cytosol	7.75	46.56
Solyc06g082520.2.1	Tomato	nucleus	48.54	45.21
KRH30646	Soybean	nucleus	50.7	43.8
VIT_06s0004g08100.t01	Wine grape	nucleus	47.9	43.38
GSMUA_Achr5P27930_001	Banana	nucleus	31.89	43.28
KRH72829	Soybean	nucleus	39.14	42.9
KRG98129	Soybean	nucleus	50.7	42.67
KRH17186	Soybean	nucleus	38.63	41.99
GSMUA_Achr8P01750_001	Banana	nucleus	44.6	40.96
TraesCS2D01G105300.1	Wheat	nucleus	44.85	38.75
Os07t0679700-01	Rice	nucleus	46.63	38.67
TraesCS2A01G105600.1	Wheat	nucleus	46.12	38.25
EER99914	Sorghum	nucleus	46.51	38.24
TraesCS2B01G122500.1	Wheat	nucleus	45.87	38.0
Zm00001d022440_P005	Maize	plastid	45.49	37.18
HORVU2Hr1G017760.4	Barley	plastid	45.24	34.36
Zm00001d007173_P003	Maize	mitochondrion, nucleus	43.08	33.5
CDX82834	Canola	nucleus	29.1	31.67
CDX79071	Canola	nucleus	28.59	31.16
CDY13657	Canola	nucleus	8.51	21.27
CDY28525	Canola	nucleus	8.26	21.04
CDY53003	Canola	nucleus	8.39	21.02
CDY34212	Canola	nucleus	8.13	20.78
PGSC0003DMT400057590	Potato	nucleus	11.82	20.13
Zm00001d037893_P001	Maize	mitochondrion	6.73	18.93
Zm00001d045970_P001	Maize	mitochondrion	6.1	18.6
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.48	17.41
CDY15679	Canola	nucleus	6.61	14.9
CDX94608	Canola	nucleus	6.61	14.9
CDY66878	Canola	nucleus	6.73	14.72
CDY46611	Canola	nucleus	6.35	13.93
CDY15121	Canola	nucleus	10.04	11.76
CDX93029	Canola	nucleus	10.55	11.56
Zm00001d029836_P001	Maize	plastid	0.51	4.55

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	GO:A0A078FF66	UniProt:A0A078FF66	InterPro:B3_DNA-bd
EnsemblPlants:CDY10738	ProteinID:CDY10738	ProteinID:CDY10738.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00048551001	InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300
PFAM:PF02362	PFAM:PF07496	PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336	PANTHER:PTHR23336:SF28
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EF09F1	InterPro:Znf_CW	SEG:seg	:

Description

BnaA05g11980DBnaA05g11980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FF66]

Coordinates

chrLK032006:-:363780..367381

Molecular Weight (calculated)

85842.2 Da

IEP (calculated)

7.696

GRAVY (calculated)

-0.634

Length

787 amino acids

Sequence
(BLAST)

001: MFEVKMGSKV CMNASCGSTS SVEWKKGWPL RSGALADLCF RCGSAYETSR FCETFHMEQS GWRECYLCNK RLHCGCIASK LVVEFMDYGG VGCSTCTNSH
101: SKRGENPGVF SRLPMNMQQT NGEIRSEANL FSQPLVSGDD KREEFTPHRG FGNLMKQDNN VTTTGYTHES SSSSPAQPSL NMALATLPYS PSFATPVVDG
201: NKLMGAGGGG VASSQSHLFQ CSASSILQKP SKSVLGTPPP GTSKSAQARI GRPPVEGRGK GHLLPRYWPK YTDKELQQIS GNLNLNIVPL FEKTLSASDA
301: GRIGRLVLPK ACAEAYFPPI SQSEGIPLKV QDVRGKEWTF QFRFWPNNNS RMYVLEGVTP CIQSMRLQAG DTVTFSRVDP GGKLIMGARK ATYTVDMQGC
401: GFANGASNED TSSSGVTENL TSINAPSCPS QMLEGLPEHL GSPHGGNGLK KSEINGGDDP SRGKEKKRTR TLGAKNKRLL LHSEESMELR VTWEEAQELL
501: RPSANAKPTV VVIEEHEFEE FEEPPVFGKR TIVVTSRPSG EQERWGSCDD CSKWRRLPVD ALLPAKWTCS DNVWDSSRCS CSAPEESLKE LENVLRAGKE
601: YKKKRIGVSQ TARNEQEPSG LDALASAAVL GDALDESEVA TTTRHPRHRV GCSCIVCIQP PSGKGRHKPT CGCTVCSTVK RRFKTLMMRR KKKQLERDGT
701: AAVDEENKEG VEPEKNEGEK EGRIDLNSDP YNREDAEAVA VEKREESKKS EGGVSWGVSQ GGGVLGETEV GGGEAEKTTS EEQKVTS

Best Arabidopsis Sequence Match ( AT2G30470.1 )
(BLAST)

001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS

Arabidopsis Description

VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.