CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93437
KRH18559
KRH18561

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30470.1	KRG93437	AT3G01320.1	19962994
AT2G30470.1	KRH18559	AT3G01320.1	19962994
AT2G30470.1	KRH18561	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98129	Soybean	nucleus	92.43	90.05
KRH37982	Soybean	cytosol, nucleus, plastid	3.73	77.27
KRH72829	Soybean	nucleus	49.18	62.4
KRH17186	Soybean	nucleus	48.96	61.6
VIT_06s0004g08100.t01	Wine grape	nucleus	50.38	52.82
KRH65426	Soybean	nucleus	51.48	51.82
KRH76125	Soybean	nucleus	51.15	51.32
CDY02066	Canola	nucleus	44.13	51.28
AT2G30470.1	Thale cress	nucleus	44.24	51.01
CDY10738	Canola	nucleus	43.8	50.7
Bra018313.1-P	Field mustard	nucleus	43.91	50.63
Solyc06g082520.2.1	Tomato	nucleus	46.87	50.53
CDX84832	Canola	nucleus	43.47	50.45
Bra022801.1-P	Field mustard	nucleus	43.25	50.32
CDX97828	Canola	nucleus	42.04	50.2
Bra021635.1-P	Field mustard	nucleus	41.93	49.35
CDY23997	Canola	nucleus	42.81	49.18
CDY29672	Canola	nucleus	41.71	48.22
GSMUA_Achr5P27930_001	Banana	nucleus	30.41	47.76
GSMUA_Achr8P01750_001	Banana	nucleus	43.91	46.67
TraesCS2D01G105300.1	Wheat	nucleus	43.25	43.25
Os07t0679700-01	Rice	nucleus	44.35	42.57
TraesCS2A01G105600.1	Wheat	nucleus	44.02	42.26
TraesCS2B01G122500.1	Wheat	nucleus	43.91	42.11
EER99914	Sorghum	nucleus	44.02	41.9
Zm00001d022440_P005	Maize	plastid	43.69	41.33
KRH10760	Soybean	nucleus	38.2	39.64
KRH21568	Soybean	nucleus	37.98	39.36
HORVU2Hr1G017760.4	Barley	plastid	43.58	38.32
Zm00001d007173_P003	Maize	mitochondrion, nucleus	42.04	37.85
PGSC0003DMT400057590	Potato	nucleus	11.64	22.94
Zm00001d037893_P001	Maize	mitochondrion	6.59	21.43
Zm00001d045970_P001	Maize	mitochondrion	5.82	20.54
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	5.93	18.43
KRG94672	Soybean	nucleus	6.59	18.07
KRH06856	Soybean	nucleus	6.37	17.16
KRG89627	Soybean	nucleus	6.48	15.65
KRG89628	Soybean	plastid	6.26	15.12
Zm00001d029836_P001	Maize	plastid	1.21	12.5
KRG99861	Soybean	nucleus	9.11	10.95
KRH46807	Soybean	nucleus	8.89	10.64

Protein Annotations

EntrezGene:100789848	MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	EMBL:ACUP02007051	InterPro:B3_DNA-bd
ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_11G197900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300	UniProt:K7LR55	ProteinID:KRH30645.1
EnsemblPlants:KRH30646	ProteinID:KRH30646	ProteinID:KRH30646.1	PFAM:PF02362	PFAM:PF07496	PFscan:PS50863
PFscan:PS51050	PANTHER:PTHR23336	PANTHER:PTHR23336:SF28	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI00029674A4
InterPro:Znf_CW	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:27469452..27478048

Molecular Weight (calculated)

100744.0 Da

IEP (calculated)

7.459

GRAVY (calculated)

-0.702

Length

911 amino acids

Sequence
(BLAST)

001: MGSDICVVNG SCTHEWRKGW PLRSGGFAQL CCKCGFMEEW KGDILDRLSA YENSVFCNKF HRQQTGWREC NFCNKPIHSG CIVSRSLFGY LDFGGIGCVS
101: CVNTTQLSMM RNTENPNVSV SSIKNNASDR HSAHFDGRLL VGGVDEGKLM QFCKIIEASE SSHWNHAQSD GIIAHHGQNN QEAKCSFREG DIGFSNVRKP
201: SVQSLTFATL ENNRSTWEIK NMHESNAQPS FSMYLGNASG NDSVPPSAGE AVEGRLEGKT SPPFQRSRPI CPKPLKSGLT MNVETDKGAI SQSRVARPPA
301: DGRGKNQLLP RYWPRITDQE LERLAGDLKS TVVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQSEG VPLRMQDVKG NEWTFQFRFW PNNNSRMYVL
401: EGVTPCIQAM QLCAGDTVTF SRIDPGGKLV MGFRKASNST DTQDASTSAQ SNSAKGTISS GTENLPSGSN HANLLHSLTG NVETHLNGHT EHLHLGTGTA
501: GLLKTENNEM TNSSSPQQQI SVLEKKRTRN IGPKSKRLLI DNEDAMELKL TWEEAQDLLR PPPSVKPNIV TIEDQVFEEY DEPPVFGKRT IFSACSSGGK
601: EQWAQCDDCS KWRKLPVDAL LPPKWTCSEN VWDSSRCSCS VPEELSSKEL ENLLKTNKDF KKRRIAESSK SIQEHEASGL DALASAAVLG ENLVDTAESS
701: AGATTKHPRH RPGCSCIVCI QPPSGKGRHK PTCTCNVCMT VKRRFKTLML RKKKRQSERE ADTAQKDQTL LKDEPDTNGA PRDDTSRLEK EVGLNKSQHQ
801: VGESSTGQID LNSHPNREDM QVETTGLNMS SHLEPATNHT VGEFMDKNDL RRSFNNEVQT GQNSSLHTPP QSSGEGQRYF SDGRCFASIV WNQERKDEVH
901: SQPNQSQNNL S

Best Arabidopsis Sequence Match ( AT2G30470.1 )
(BLAST)

001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS

Arabidopsis Description

VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.