CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89628	Soybean	plastid	96.55	96.55
KRH37982	Soybean	cytosol, nucleus, plastid	3.71	31.82
GSMUA_Achr8P18070_001	Banana	nucleus	16.45	29.81
GSMUA_Achr3P32440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	15.92	29.56
Os01t0713600-01	Rice	plastid	16.98	22.15
TraesCS3D01G249100.1	Wheat	plastid	17.24	21.59
TraesCS3B01G278000.1	Wheat	plastid	17.24	21.52
CDY15679	Canola	nucleus	19.36	20.92
AT1G28300.1	Thale cress	nucleus	19.89	20.66
CDX94608	Canola	nucleus	19.1	20.63
Bra030087.1-P	Field mustard	nucleus	18.3	20.06
CDY46611	Canola	nucleus	19.1	20.06
CDY66878	Canola	nucleus	19.1	20.0
Bra032890.1-P	Field mustard	nucleus	18.04	19.21
KRG94672	Soybean	nucleus	15.92	18.07
KRH06856	Soybean	nucleus	16.18	18.05
TraesCS3A01G249100.2	Wheat	nucleus	17.51	17.01
HORVU3Hr1G067350.2	Barley	nucleus	16.71	16.98
Zm00001d011712_P001	Maize	mitochondrion	16.71	16.07
KXG33236	Sorghum	mitochondrion, nucleus	16.45	15.82
KRG99861	Soybean	nucleus	20.42	10.16
KRH46807	Soybean	nucleus	20.42	10.12
KRH72829	Soybean	nucleus	14.32	7.52
KRH17186	Soybean	nucleus	14.06	7.32
KRH10760	Soybean	nucleus	16.45	7.06
KRH21568	Soybean	nucleus	16.45	7.05
KRH65426	Soybean	nucleus	16.45	6.85
KRH76125	Soybean	nucleus	16.45	6.83
KRG98129	Soybean	nucleus	16.45	6.63
KRH30646	Soybean	nucleus	15.65	6.48

Protein Annotations

EntrezGene:106797573	MapMan:15.5.5.5	Gene3D:2.40.330.10	UniProt:A0A0R0E6M1	EMBL:ACUP02012232	InterPro:B3_DNA-bd
ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_20G035700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003340	InterPro:IPR015300	EnsemblPlants:KRG89627	ProteinID:KRG89627	ProteinID:KRG89627.1	PFAM:PF02362
PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0006EE188A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:5007023..5009649

Molecular Weight (calculated)

42644.9 Da

IEP (calculated)

6.276

GRAVY (calculated)

-0.750

Length

377 amino acids

Sequence
(BLAST)

001: MENFFVPFFK KNPNPSITTT GGSGSSSSNQ TSLVQPSTYP QNFPYNTSEK LNFPEQPYFI PLYPFPTGQV SFSNQPYGMP NSELQGSRAC MTKATRERWR
101: QVRQRSKNST PVAPNSILEG TTREQFVPNG GSNVRITVKQ HNATKFFNTP NGKKLEEILT KKLNKSDVGV LGRIVLPKRE AEDKLPTLWK KEGINIVLKD
201: VYSEIEWSIK YKYWTNNKSR MYILDNIGDF VNHYKLQAGD FITLYKDELK NLYVSARKDH ENLEESKSSS NTGMSHEPDA YLAYLTKELG HKGKAEAANN
301: LLNNVEEEAP YQANQLHQFM PMNNIVGEGA SNQAIQEAAP AAPVNVDQEN KVVDDDDDDI YGGLDNIFEI GNTYQIW

Best Arabidopsis Sequence Match ( AT1G28300.1 )
(BLAST)

001: MDNFLPFPSS NANSVQELSM DPNNNRSHFT TVPTYDHHQA QPHHFLPPFS YPVEQMAAVM NPQPVYLSEC YPQIPVTQTG SEFGSLVGNP CLWQERGGFL
101: DPRMTKMARI NRKNAMMRSR NNSSPNSSPS ELVDSKRQLM MLNLKNNVQI SDKKDSYQQS TFDNKKLRVL CEKELKNSDV GSLGRIVLPK RDAEANLPKL
201: SDKEGIVVQM RDVFSMQSWS FKYKFWSNNK SRMYVLENTG EFVKQNGAEI GDFLTIYEDE SKNLYFAMNG NSGKQNEGRE NESRERNHYE EAMLDYIPRD
301: EEEASIAMLI GNLNDHYPIP NDLMDLTTDL QHHQATSSSM PPEDHAYVGS SDDQVSFNDF EWW

Arabidopsis Description

LEC2B3 domain-containing transcription factor LEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.