CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76125	Soybean	nucleus	95.8	95.48
KRH37982	Soybean	cytosol, nucleus, plastid	4.09	84.09
VIT_08s0058g01300.t01	Wine grape	nucleus	68.62	67.21
Solyc10g075030.1.1	Tomato	nucleus	58.34	60.07
Bra023968.1-P	Field mustard	nucleus	50.17	58.96
CDY13468	Canola	nucleus	50.17	58.96
CDX72340	Canola	nucleus	49.83	58.65
AT4G32010.1	Thale cress	nucleus	48.29	56.03
GSMUA_Achr5P27930_001	Banana	nucleus	33.04	51.55
KRH30646	Soybean	nucleus	51.82	51.48
GSMUA_Achr8P01750_001	Banana	nucleus	48.29	50.99
KRG98129	Soybean	nucleus	51.38	49.73
EER99914	Sorghum	nucleus	49.61	46.92
TraesCS2A01G105600.1	Wheat	nucleus	49.17	46.89
TraesCS2D01G105300.1	Wheat	nucleus	47.18	46.87
Os07t0679700-01	Rice	nucleus	48.95	46.68
KRH72829	Soybean	nucleus	36.91	46.52
TraesCS2B01G122500.1	Wheat	nucleus	48.51	46.21
Zm00001d022440_P005	Maize	plastid	49.06	46.11
KRH17186	Soybean	nucleus	35.69	44.61
HORVU2Hr1G017760.4	Barley	plastid	48.95	42.76
Zm00001d007173_P003	Maize	mitochondrion, nucleus	46.52	41.6
KRH21568	Soybean	nucleus	40.33	41.52
KRH10760	Soybean	nucleus	40.22	41.46
PGSC0003DMT400057590	Potato	nucleus	12.27	24.03
Zm00001d037893_P001	Maize	mitochondrion	6.41	20.71
Zm00001d045970_P001	Maize	mitochondrion	5.75	20.16
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.52	20.14
KRG89627	Soybean	nucleus	6.85	16.45
KRG94672	Soybean	nucleus	5.97	16.27
KRH06856	Soybean	nucleus	5.97	15.98
KRG89628	Soybean	plastid	6.63	15.92
KRG99861	Soybean	nucleus	8.95	10.69
KRH46807	Soybean	nucleus	8.62	10.25
Zm00001d029836_P001	Maize	plastid	0.77	7.95

Protein Annotations

EntrezGene:100778833	MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	EMBL:ACUP02001352	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_03G035200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300	UniProt:K7KCN0	EnsemblPlants:KRH65426	ProteinID:KRH65426
ProteinID:KRH65426.1	PFAM:PF02362	PFAM:PF07496	PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336
PANTHER:PTHR23336:SF28	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI00029623B6	InterPro:Znf_CW	:

Description

hypothetical protein

Coordinates

chr3:+:4265953..4274479

Molecular Weight (calculated)

100292.0 Da

IEP (calculated)

6.730

GRAVY (calculated)

-0.650

Length

905 amino acids

Sequence
(BLAST)

001: MESRSCMNVA CATSTTIRWR KGWALRSGEF ADLCDKCGSA YEQSTYCDMF HSNDSGWREC TSCDKRLHCG CIASMSQLEL LDTGGVSCIS CARNSGLQPI
101: ANNEKPNGSG TSKVQNVSTQ QQYTSLANQL TVRGMQVGHY AENDGLRCWF KPHNVETDGP SAEMKPEILP SVGELGNTLI SQFHCESNGS SKASKAENCK
201: AETEMRDIYE SLAQTNLSMT LAAPLGNSNP FHSAVVDERE QSKTSPLLLG SRSRHLLPKP PRSTIGTSLE ANAGMVSQIR VARPPAEGRG RNQLLPRYWP
301: RITDQELQQI SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR IQDVKGKEWM FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA
401: GDTVTFSRMD PEGKLIMGFR KATNSTAVQE TLPSNMPNGS HSSETSYSGV YENLPILSGY SGLLQSQKGC SETHLNALSK KWNSAGGDMN WHSIDMPESR
501: KRDGLPLPPV MVPEKKRTRN IGSKSKRLLI DSQDALELKL TWEEAQDLLR PPPTVKPSIV MIEDHVFEEY EEPPVFGKRS IFVVRSTGVN EQWMQCDSCS
601: KWRKLPVDAL IPPKWTCVEN LWDQSRCSCA APNELNPREL DNLLRLNKEF KKQRLAASQR LALERESSGL DALANAAILG DDASDSGRTP VVTTTKHPRH
701: RPGCSCIVCI QPPSGKGKHK PTCTCNVCMT VKRRFKTLMM RKKKRQSERE AEIAQRNQLS WRTKDESEVD STSRHLTPVD GLENEVRVQN ELDSRSPDDA
801: VAEAAKGQLD LNCQPDREDV QAGPNSLSMT SLLEEANLPL ETYLKQNGLT SLITEQQTNS ASNVQAQTTN DSEVKHNEDC GTASVIHAQE SSPEENSGQD
901: KEQNN

Best Arabidopsis Sequence Match ( AT4G32010.2 )
(BLAST)

001: MESIKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG CAYEQSIFCE VFHAKESGWR ECNSCDKRLH CGCIASRFMM ELLENGGVTC ISCAKKSGLI
101: SMNVSHESNG KDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTHSSLQMK QEESLLPSSL DALRHKTERK ELSAQPNLSI SLGPTLMTSP FHDAAVDDRS
201: KTNSIFQLAP RSRQLLPKPA NSAPIAAGME PSGSLVSQIH VARPPPEGRG KTQLLPRYWP RITDQELLQL SGHSNSKIIP LFEKVLSASD AGRIGRLVLP
301: KACAEAYFPP ISLPEGLPLK IQDIKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRTE PEGKLVMGYR KATNSTATQM FKGSSEPNLN
401: MFSNSLNPGC GDINWSKLEK SEDMAKDNLF LQSSLTSARK RVRNIGTKSK RLLIDSVDVL ELKITWEEAQ ELLRPPQSTK PSIFTLENQD FEEYDEPPVF
501: GKRTLFVSRQ TGEQEQWVQC DACGKWRQLP VDILLPPKWS CSDNLLDPGR SSCSAPDELS PREQDTLVRQ SKEFKRRRLA SSNEKLNQSQ DASALNSLGN
601: AGITTTGEQG EITVAATTKH PRHRAGCSCI VCSQPPSGKG KHKPSCTCTV CEAVKRRFRT LMLRKRNKGE AGQASQQAQS QSECRDETEV ESIPAVELAA
701: GENIDLNSDP GASRVSMMRL LQAAAFPLEA YLKQKAISNT AGEQQSSDMV STEHGSSSAA QETEKDTTNG AHDPVN

Arabidopsis Description

VAL2B3 domain-containing transcription repressor VAL2 [Source:UniProtKB/Swiss-Prot;Acc:Q5CCK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.