Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400003538 | |
| PGSC0003DMT400003545 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30470.1 | PGSC0003DMT400003538 | AT3G01320.1 | 19962994 |
| AT2G30470.1 | PGSC0003DMT400003545 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G040390.1 | Barley | nucleus | 21.43 | 49.01 |
| Solyc02g079020.2.1 | Tomato | nucleus | 81.6 | 36.15 |
| PGSC0003DMT400078282 | Potato | nucleus | 23.81 | 27.43 |
| KRH21568 | Soybean | nucleus | 39.39 | 20.71 |
| KRH10760 | Soybean | nucleus | 38.96 | 20.5 |
| GSMUA_Achr7P00120_001 | Banana | nucleus, plastid | 30.52 | 15.82 |
| GSMUA_Achr4P23790_001 | Banana | nucleus | 27.27 | 14.17 |
| TraesCS2D01G211600.2 | Wheat | plastid | 28.14 | 13.49 |
| TraesCS2A01G204300.1 | Wheat | plastid | 28.14 | 13.49 |
| TraesCS2B01G231800.1 | Wheat | plastid | 27.92 | 13.44 |
| GSMUA_Achr8P03800_001 | Banana | nucleus | 23.59 | 13.34 |
| Solyc06g082520.2.1 | Tomato | nucleus | 24.24 | 13.25 |
| Zm00001d006597_P003 | Maize | plastid | 27.06 | 12.95 |
| Zm00001d021790_P010 | Maize | nucleus | 26.62 | 12.72 |
| CDX72340 | Canola | nucleus | 21.0 | 12.61 |
| CDY13468 | Canola | nucleus | 21.0 | 12.6 |
| Bra023968.1-P | Field mustard | nucleus | 21.0 | 12.6 |
| CDX97828 | Canola | nucleus | 20.78 | 12.58 |
| Os07t0563300-01 | Rice | nucleus | 25.97 | 12.57 |
| KXG36480 | Sorghum | nucleus | 26.19 | 12.5 |
| VIT_06s0004g08100.t01 | Wine grape | nucleus | 23.38 | 12.43 |
| CDY29672 | Canola | nucleus | 21.0 | 12.31 |
| KRH65426 | Soybean | nucleus | 24.03 | 12.27 |
| Bra021635.1-P | Field mustard | nucleus | 20.35 | 12.14 |
| VIT_08s0058g01300.t01 | Wine grape | nucleus | 24.03 | 12.01 |
| KRH76125 | Soybean | nucleus | 23.59 | 12.0 |
| AT4G32010.1 | Thale cress | nucleus | 20.13 | 11.92 |
| GSMUA_Achr8P01750_001 | Banana | nucleus | 22.08 | 11.9 |
| Bra018313.1-P | Field mustard | nucleus | 20.35 | 11.9 |
| CDY02066 | Canola | nucleus | 20.13 | 11.86 |
| CDY10738 | Canola | nucleus | 20.13 | 11.82 |
| AT2G30470.1 | Thale cress | nucleus | 20.13 | 11.77 |
| Bra022801.1-P | Field mustard | nucleus | 19.91 | 11.75 |
| CDX84832 | Canola | nucleus | 19.91 | 11.72 |
| KRH30646 | Soybean | nucleus | 22.94 | 11.64 |
| TraesCS2D01G105300.1 | Wheat | nucleus | 22.94 | 11.64 |
| CDY23997 | Canola | nucleus | 19.91 | 11.6 |
| Os07t0679700-01 | Rice | nucleus | 23.81 | 11.59 |
| EER99914 | Sorghum | nucleus | 23.59 | 11.39 |
| TraesCS2A01G105600.1 | Wheat | nucleus | 23.16 | 11.28 |
| TraesCS2B01G122500.1 | Wheat | nucleus | 23.16 | 11.26 |
| KRG98129 | Soybean | nucleus | 22.51 | 11.12 |
| Zm00001d022440_P005 | Maize | plastid | 22.51 | 10.8 |
| Solyc10g075030.1.1 | Tomato | nucleus | 20.35 | 10.69 |
| Zm00001d007173_P003 | Maize | mitochondrion, nucleus | 22.08 | 10.08 |
| AT4G21550.1 | Thale cress | nucleus, plastid | 14.07 | 9.09 |
| KRH72829 | Soybean | nucleus | 13.2 | 8.5 |
| CDX82834 | Canola | nucleus | 12.99 | 8.3 |
| Bra013535.1-P | Field mustard | nucleus | 12.55 | 8.3 |
| CDX79071 | Canola | nucleus | 12.55 | 8.03 |
| KRH17186 | Soybean | nucleus | 11.26 | 7.18 |
| PGSC0003DMT400052167 | Potato | nucleus | 0.87 | 1.39 |
| PGSC0003DMT400051934 | Potato | nucleus | 0.65 | 0.48 |
| Zm00001d037893_P001 | Maize | mitochondrion | 0.22 | 0.36 |
| PGSC0003DMT400051746 | Potato | nucleus | 0.43 | 0.34 |
| Zm00001d038148_P001 | Maize | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 0.22 | 0.34 |
| GSMUA_Achr5P27930_001 | Banana | nucleus | 0.22 | 0.17 |
| PGSC0003DMT400064355 | Potato | plastid | 0.0 | 0.0 |
| VIT_00s0181g00260.t01 | Wine grape | nucleus | 0.0 | 0.0 |
| KRH37982 | Soybean | cytosol, nucleus, plastid | 0.0 | 0.0 |
| Zm00001d029836_P001 | Maize | plastid | 0.0 | 0.0 |
| Zm00001d045970_P001 | Maize | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400057590 | EnsemblPlantsGene:PGSC0003DMG400022362 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011124 | InterPro:Znf_CW | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF10 | PFAM:PF07496 | PFscan:PS51050 |
| PGSC:PGSC0003DMG400022362 | UniParc:UPI000294D9C2 | UniProt:M1C1B8 | MapMan:15.5.5.4 | : | : |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400022362]
Coordinates
chr2:-:34718203..34721137
Molecular Weight (calculated)
51178.9 Da
IEP (calculated)
4.841
GRAVY (calculated)
-1.014
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQLGAKIQW VQCEDCFKWR KVPDNVDLPS RWTCSDNSRD PERSMCSAVQ ELTADHLRDL LPHINKASKK RRASKQEMDL VETLDGLDAL AHLAILEEGE
101: TLPASPQATT KHPRHRPGCT CIVCIQPPSG KGPKHKQSCD CNVCKSVKRR FKTLMLKREK KLSEKEAEAT CQKLQPQSAG QLLDAVDIQE SIDDAAHLSP
201: QHGELNNEGS VDPNYLNEKK SSVDDPSYLN EKKSSVDDPN YLNEKKSSVD DPSYLNEKKS SVDDPNYLNE KKSSVDDPSY LNEKKSSVDD PNYLNEKKSS
301: VDDPNSLNEK ESSVDDPNCL NEKKSSVDDP NCLTEKKSSV DDPNYVDERK SSVDDPNYLT EKKSSASPFK GEFDLNAKPE RDDELSPGSD SGSMIRIIKR
401: AAEQYVRHCE NGSSVGNQIN GDGAGETNPS NCVIVSGSQQ TDVDHNRPLP ISTAASLAPN DQ
101: TLPASPQATT KHPRHRPGCT CIVCIQPPSG KGPKHKQSCD CNVCKSVKRR FKTLMLKREK KLSEKEAEAT CQKLQPQSAG QLLDAVDIQE SIDDAAHLSP
201: QHGELNNEGS VDPNYLNEKK SSVDDPSYLN EKKSSVDDPN YLNEKKSSVD DPSYLNEKKS SVDDPNYLNE KKSSVDDPSY LNEKKSSVDD PNYLNEKKSS
301: VDDPNSLNEK ESSVDDPNCL NEKKSSVDDP NCLTEKKSSV DDPNYVDERK SSVDDPNYLT EKKSSASPFK GEFDLNAKPE RDDELSPGSD SGSMIRIIKR
401: AAEQYVRHCE NGSSVGNQIN GDGAGETNPS NCVIVSGSQQ TDVDHNRPLP ISTAASLAPN DQ
001: MESIKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG CAYEQSIFCE VFHAKESGWR ECNSCDKRLH CGCIASRFMM ELLENGGVTC ISCAKKSGLI
101: SMNVSHESNG KDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTHSSLQMK QEESLLPSSL DALRHKTERK ELSAQPNLSI SLGPTLMTSP FHDAAVDDRS
201: KTNSIFQLAP RSRQLLPKPA NSAPIAAGME PSGSLVSQIH VARPPPEGRG KTQLLPRYWP RITDQELLQL SGQYPHLSNS KIIPLFEKVL SASDAGRIGR
301: LVLPKACAEA YFPPISLPEG LPLKIQDIKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRTEPEGKLV MGYRKATNST ATQMFKGSSE
401: PNLNMFSNSL NPGCGDINWS KLEKSEDMAK DNLFLQSSLT SARKRVRNIG TKSKRLLIDS VDVLELKITW EEAQELLRPP QSTKPSIFTL ENQDFEEYDE
501: PPVFGKRTLF VSRQTGEQEQ WVQCDACGKW RQLPVDILLP PKWSCSDNLL DPGRSSCSAP DELSPREQDT LVRQSKEFKR RRLASSNEKL NQSQDASALN
601: SLGNAGITTT GEQGEITVAA TTKHPRHRAG CSCIVCSQPP SGKGKHKPSC TCTVCEAVKR RFRTLMLRKR NKGEAGQASQ QAQSQSECRD ETEVESIPAV
701: ELAAGENIDL NSDPGASRVS MMRLLQAAAF PLEAYLKQKA ISNTAGEQQS SDMVSTEHGS SSAAQETEKD TTNGAHDPVN
101: SMNVSHESNG KDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTHSSLQMK QEESLLPSSL DALRHKTERK ELSAQPNLSI SLGPTLMTSP FHDAAVDDRS
201: KTNSIFQLAP RSRQLLPKPA NSAPIAAGME PSGSLVSQIH VARPPPEGRG KTQLLPRYWP RITDQELLQL SGQYPHLSNS KIIPLFEKVL SASDAGRIGR
301: LVLPKACAEA YFPPISLPEG LPLKIQDIKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRTEPEGKLV MGYRKATNST ATQMFKGSSE
401: PNLNMFSNSL NPGCGDINWS KLEKSEDMAK DNLFLQSSLT SARKRVRNIG TKSKRLLIDS VDVLELKITW EEAQELLRPP QSTKPSIFTL ENQDFEEYDE
501: PPVFGKRTLF VSRQTGEQEQ WVQCDACGKW RQLPVDILLP PKWSCSDNLL DPGRSSCSAP DELSPREQDT LVRQSKEFKR RRLASSNEKL NQSQDASALN
601: SLGNAGITTT GEQGEITVAA TTKHPRHRAG CSCIVCSQPP SGKGKHKPSC TCTVCEAVKR RFRTLMLRKR NKGEAGQASQ QAQSQSECRD ETEVESIPAV
701: ELAAGENIDL NSDPGASRVS MMRLLQAAAF PLEAYLKQKA ISNTAGEQQS SDMVSTEHGS SSAAQETEKD TTNGAHDPVN
Arabidopsis Description
VAL2B3 domain-containing transcription repressor VAL2 [Source:UniProtKB/Swiss-Prot;Acc:Q5CCK4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.