Factsheet for GSMUA_Achr4P23790_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P00120_001	Banana	nucleus, plastid	74.35	74.19
GSMUA_Achr8P03800_001	Banana	nucleus	63.78	69.4
Os07t0563300-01	Rice	nucleus	56.81	52.88
TraesCS2B01G231800.1	Wheat	plastid	56.13	51.98
TraesCS2A01G204300.1	Wheat	plastid	56.24	51.87
TraesCS2D01G211600.2	Wheat	plastid	56.02	51.66
VIT_00s0181g00260.t01	Wine grape	nucleus	33.41	51.65
HORVU2Hr1G040410.4	Barley	nucleus, plastid	56.47	51.38
Zm00001d006597_P003	Maize	plastid	55.12	50.78
KXG36480	Sorghum	nucleus	55.23	50.72
HORVU2Hr1G040400.1	Barley	nucleus	24.07	50.71
KRH21568	Soybean	nucleus	49.72	50.28
KRH10760	Soybean	nucleus	49.61	50.23
Zm00001d021790_P010	Maize	nucleus	54.33	49.95
GSMUA_Achr5P27940_001	Banana	nucleus	10.8	43.64
GSMUA_Achr5P27930_001	Banana	nucleus	26.1	40.0
GSMUA_Achr8P01750_001	Banana	nucleus	36.9	38.27
Solyc02g079020.2.1	Tomato	nucleus	44.09	37.58
Bra013535.1-P	Field mustard	nucleus	29.36	37.34
AT4G21550.1	Thale cress	nucleus, plastid	29.92	37.2
CDX82834	Canola	nucleus	30.03	36.93
CDX79071	Canola	nucleus	29.92	36.84
PGSC0003DMT400057590	Potato	nucleus	14.17	27.27
GSMUA_Achr3P00120_001	Banana	nucleus	5.51	27.07
GSMUA_Achr8P18070_001	Banana	nucleus	5.17	22.12
GSMUA_Achr3P32440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	4.95	21.67
GSMUA_AchrUn_...	Banana	nucleus	8.55	11.21
GSMUA_Achr7P23040_001	Banana	nucleus	7.99	9.69

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G23790_001	EnsemblPlants:GSMUA_Achr4P23790_001
EnsemblPlants:GSMUA_Achr4T23790_001	InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300	UniProt:M0SRJ0	PFAM:PF02362
PFAM:PF07496	PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336	PANTHER:PTHR23336:SF10	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI0002948892	InterPro:Znf_CW	SEG:seg	:	:

Description

B3 domain-containing protein Os07g0563300 [Source:GMGC_GENE;Acc:GSMUA_Achr4G23790_001]

Coordinates

chr4:-:23776905..23800358

Molecular Weight (calculated)

98368.9 Da

IEP (calculated)

8.109

GRAVY (calculated)

-0.594

Length

889 amino acids

Sequence
(BLAST)

001: MEAVIYANNS INLFHSNDIS WHLLISNICG WVDLISSLVP FLLVVMSSSS SAAVVTAKIC FNSECKEPLP DPLPTRRKGW RLRSGEIADL CDRCSCSFEQ
101: GNFCETFHSD DAGWRNCKTC GKRVHCGCVV SVSTYVLLDA GGVDCVACAR KSLVMAPNQV ASSPMFMSQQ GPERREFPAK SWKPVSGPFF GQWRQAPHMW
201: NMTSAQSDLQ QRLSYEFDRP NCIEKLAPGG RYSILAHEKK FENISEKPIT GNLNNVARER YANGKVGIDA ASTFGAYHGE GNADTVQDSC RLVGDSDSVS
301: TRKSVNADPC STSSSGANLD AHPNSCVNSL PSSAIKEDSS SLGLAAVFQS TNCSKEPTRF SANQSQSQAD PLSKQFYPPS VIDPEVQSQM RNGKTRVDNR
401: TRSQLLPRYW PRITDQELQQ ISGGGDSNSV ITPLFEKMLS ASDAGRIGRL VLPKKCAEAY FPIISQPEGL PLKVQDASGK DWVFQFRYWP NNNSRMYVLE
501: GVTPCIQAMQ LQAGDTVTFS RIDPEGKLIM GFRKASCGSS EQDSQAVKSG NGFSTPPEKQ RNCSNFANEG VLQKDGLSAR SSQGTRRKGG NLGSKSKRLR
601: IENEDSMELK LTWEEAQQLL RPPPNCVPSV VLVEGHEFEE YEEAPVLGKR TYFTTNQSGE NYQWAQCEDC SKWRRLPVDA LLPSRWTCSN NTWDTERSLC
701: SAAQELSLEQ LAELIPCKTG APKRSKVKVE TDNIEVSDGL DTLANLAILG EGENLPPSSQ PTTKHPRHRP GCTCIVCIQP PSGKGPKHKQ SCTCNVCLTV
801: KRRFRTLMLR REKRQSEKEA ETARKQQKQQ PNQSSPVKAQ APQIDLNIQP EREEETSPKS ESEKRKEVLR HGSVRSYVTA ILSPTSNQI

Best Arabidopsis Sequence Match ( AT4G32010.2 )
(BLAST)

001: MESIKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG CAYEQSIFCE VFHAKESGWR ECNSCDKRLH CGCIASRFMM ELLENGGVTC ISCAKKSGLI
101: SMNVSHESNG KDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTHSSLQMK QEESLLPSSL DALRHKTERK ELSAQPNLSI SLGPTLMTSP FHDAAVDDRS
201: KTNSIFQLAP RSRQLLPKPA NSAPIAAGME PSGSLVSQIH VARPPPEGRG KTQLLPRYWP RITDQELLQL SGHSNSKIIP LFEKVLSASD AGRIGRLVLP
301: KACAEAYFPP ISLPEGLPLK IQDIKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRTE PEGKLVMGYR KATNSTATQM FKGSSEPNLN
401: MFSNSLNPGC GDINWSKLEK SEDMAKDNLF LQSSLTSARK RVRNIGTKSK RLLIDSVDVL ELKITWEEAQ ELLRPPQSTK PSIFTLENQD FEEYDEPPVF
501: GKRTLFVSRQ TGEQEQWVQC DACGKWRQLP VDILLPPKWS CSDNLLDPGR SSCSAPDELS PREQDTLVRQ SKEFKRRRLA SSNEKLNQSQ DASALNSLGN
601: AGITTTGEQG EITVAATTKH PRHRAGCSCI VCSQPPSGKG KHKPSCTCTV CEAVKRRFRT LMLRKRNKGE AGQASQQAQS QSECRDETEV ESIPAVELAA
701: GENIDLNSDP GASRVSMMRL LQAAAFPLEA YLKQKAISNT AGEQQSSDMV STEHGSSSAA QETEKDTTNG AHDPVN

Arabidopsis Description

VAL2B3 domain-containing transcription repressor VAL2 [Source:UniProtKB/Swiss-Prot;Acc:Q5CCK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.