Factsheet for HORVU2Hr1G040410.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G040390.1	Barley	nucleus	19.65	95.05
HORVU2Hr1G040400.1	Barley	nucleus	40.12	92.89
TraesCS2A01G204300.1	Wheat	plastid	90.58	91.81
TraesCS2B01G231800.1	Wheat	plastid	90.17	91.77
TraesCS2D01G211600.2	Wheat	plastid	90.28	91.49
Os07t0563300-01	Rice	nucleus	69.29	70.89
KXG36480	Sorghum	nucleus	65.4	66.01
Zm00001d021790_P010	Maize	nucleus	65.1	65.77
Zm00001d006597_P003	Maize	plastid	64.07	64.87
GSMUA_Achr4P23790_001	Banana	nucleus	51.38	56.47
GSMUA_Achr8P03800_001	Banana	nucleus	47.19	56.43
GSMUA_Achr7P00120_001	Banana	nucleus, plastid	50.15	54.99
VIT_00s0181g00260.t01	Wine grape	nucleus	28.97	49.22
KRH10760	Soybean	nucleus	43.81	48.75
KRH21568	Soybean	nucleus	43.81	48.69
Solyc02g079020.2.1	Tomato	nucleus	39.92	37.39
Bra013535.1-P	Field mustard	nucleus	25.69	35.91
CDX79071	Canola	nucleus	25.9	35.04
CDX82834	Canola	nucleus	25.79	34.85
AT4G21550.1	Thale cress	nucleus, plastid	25.38	34.69
HORVU2Hr1G017760.4	Barley	plastid	32.96	31.08
HORVU7Hr1G078770.5	Barley	nucleus	5.02	14.04
HORVU3Hr1G067350.2	Barley	nucleus	5.32	14.02
HORVU2Hr1G119600.1	Barley	nucleus	6.14	13.86
HORVU3Hr1G092690.2	Barley	nucleus	7.06	10.12

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	UniProt:A0A287HSQ3	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU2Hr1G040410	EnsemblPlants:HORVU2Hr1G040410.4
InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300	PFAM:PF02362	PFAM:PF07496	PFscan:PS50863
PFscan:PS51050	PANTHER:PTHR23336	PANTHER:PTHR23336:SF10	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000B47AF40
InterPro:Znf_CW	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:196197203..196206829

Molecular Weight (calculated)

107725.0 Da

IEP (calculated)

8.259

GRAVY (calculated)

-0.766

Length

977 amino acids

Sequence
(BLAST)

001: SNSTPMVGGE SEAFRVHVAR AIQTLGTTTT FLRLALKAAL LLLPSPRPSP PPPXXXXXXX SKQPQQQHQQ QQQQGPSPAS LQQRPRICFN AHCKDPKSEG
101: ARHRGWRLRS GDYAELCDRC YGSFEHGTFC ETFHSEVAGW RKCEACGKRL HCGCIVSVHA YALLDAGGVD CILCARKSYV AMAPSQMWST PTVHMPQNVA
201: DRKDSYVKSW RPPAGQISSQ WRQNHQLWNM SSIQTDLQQR LAYEFDRPSG SEKLPPGRTF IHAQEKKSDD MHDRPTTPAG MGQIIRDRYA NGLGQQTNMD
301: PTHSSTPYQR EGPNQNSLHD PSHHVGESDP LSSRKGIVSD GGSTASTGFK LDPHHPSILK DDAASTLPTM GGYTITNYPP VPGRSDHLRI IPNNPQQPPT
401: TVPVSVVQKQ FYSHSVIEPD YQAQFRNGKP RMESRMDAKA RSQLLPRYWP RITDKELQHL SGDSNSVITP LFEKMLSASD AGRIGRLVLP KKCAEAYFPP
501: ISQPEGLPLK VQDASGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMHLQA GDTVSFSRID PEGKLVMGFR KTKTQEQIFR QEEPTKPANA APNLPDVNVN
601: VTAPDSSPNS ALARPNKVNT ENKDTSPVEQ AAACKMEKTG VAQKEGQGTV RSSPGPVKRK ATSLGSKIKR FRIDNEESME LKITWEEAQE LLRPPLKAPS
701: VVIVDGHEFE EYEEPPVLGR KTYFVTDQSG ENHQWAQCED CSKWRKLPVD ALLPSKWTCS DNKWDPERTT CVSPQEASME QLAELIPIKA GAAKKAKLKM
801: ETDSIDVSDG LDTLANLAIL GEGESLPSQP TTKHPRHRPG CSCIVCIQPP SGKGPKHKQT CTCNVCMTVR RRFRTLMLRR EKRASEKESE EPPRKKEQGQ
901: SSESIPQDVL PASTSPTSTP QNVNGNGEDA EETVEHSMVS SPMKNQIDLN IQPEREDEQS PKSDAVGAMR LPRENAA

Best Arabidopsis Sequence Match ( AT4G21550.1 )
(BLAST)

001: MLSSSSMSSS SLSARFCFNH ECFEFKLDHC RPGWRLRSGD FVDLCDRCAS AYEQGKFCDV FHQRASGWRC CESCGKRIHC GCIASASAYT LMDAGGIECL
101: ACARKKFALG PNFSPSPSFL FQSPISEKFK DLSINWSSST RSNQISYQPP SCLDPSVLQF DFRNRGGNNE FSQPASKERV TACTMEKKRG MNDMIGKLMS
201: ENSKHYRVSP FPNVNVYHPL ISLKEGPCGT QLAFPVPITT PIEKTGHSRL DGSNLWHTRN SSPLSRLHND LNGGADSPFE SKSRNVMAHL ETPGKYQVVP
301: RFWPKVSYKN QVLQNQSKES ESVVTPLFEK ILSATDTGKR LVLPKKYAEA FLPQLSHTKG VPLTVQDPMG KEWRFQFRFW PSSKGRIYVL EGVTPFIQTL
401: QLQAGDTVIF SRLDPERKLI LGFRKASITQ SSDQADPADM HSPFEVKKSA YITKETPGVE CSSGKKKSSM MITRSKRQKV EKGDDNLLKL TWEEAQGFLL
501: PPPNLTPSRV VIEDYEFEEY EEAPIIGKPT DVAGFRSTCT EVEGLLISPT TTKHPRHRDG CTCIICIQSP SGIGPKHDRC CSCAVCDTNK RRRRSLLLRR
601: EKKQMEKEDN ARKLLEQLNS DNGLHQSANN SENHERHASP LKVQLDLNFK PEKDEESLPG SNKTTKSETL PHDDTVKSSF TSPSSSSAHS QNNKEDEGKL
701: KTTTEIADTT TTSSM

Arabidopsis Description

VAL3VP1/ABI3-like 3 [Source:TAIR;Acc:AT4G21550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.