Factsheet for VIT_00s0181g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10760	Soybean	nucleus	63.83	41.8
KRH21568	Soybean	nucleus	63.83	41.75
HORVU2Hr1G040400.1	Barley	nucleus	29.22	39.81
VIT_19s0014g03560.t01	Wine grape	nucleus	16.87	38.96
GSMUA_Achr8P03800_001	Banana	nucleus	50.96	35.86
GSMUA_Achr4P23790_001	Banana	nucleus	51.65	33.41
GSMUA_Achr7P00120_001	Banana	nucleus, plastid	49.91	32.21
AT4G21550.1	Thale cress	nucleus, plastid	37.74	30.35
Bra013535.1-P	Field mustard	nucleus	36.87	30.33
CDX79071	Canola	nucleus	37.74	30.06
CDX82834	Canola	nucleus	37.74	30.01
Solyc02g079020.2.1	Tomato	nucleus	54.09	29.82
Os07t0563300-01	Rice	nucleus	49.04	29.53
TraesCS2B01G231800.1	Wheat	plastid	49.04	29.38
TraesCS2A01G204300.1	Wheat	plastid	49.04	29.25
TraesCS2D01G211600.2	Wheat	plastid	49.04	29.25
HORVU2Hr1G040410.4	Barley	nucleus, plastid	49.22	28.97
Zm00001d006597_P003	Maize	plastid	48.52	28.91
KXG36480	Sorghum	nucleus	48.0	28.51
Zm00001d021790_P010	Maize	nucleus	47.65	28.34
VIT_08s0058g01300.t01	Wine grape	nucleus	41.91	26.08
VIT_06s0004g08100.t01	Wine grape	nucleus	38.78	25.66
VIT_14s0068g01290.t01	Wine grape	nucleus	9.57	19.16
VIT_10s0071g00270.t01	Wine grape	nucleus	9.22	17.38
VIT_07s0005g05400.t01	Wine grape	nucleus	12.87	10.1
PGSC0003DMT400057590	Potato	nucleus	0.0	0.0

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	ProteinID:CCB48285	ProteinID:CCB48285.1	InterPro:DNA-bd_pseudobarrel_sf
UniProt:F6H7U3	EMBL:FN595252	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340
InterPro:IPR015300	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR23336	PANTHER:PTHR23336:SF10	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI0002109592	ArrayExpress:VIT_00s0181g00260	EnsemblPlantsGene:VIT_00s0181g00260	EnsemblPlants:VIT_00s0181g00260.t01	SEG:seg

Description

No Description!

Coordinates

chrUn:+:7958408..7975562

Molecular Weight (calculated)

63062.4 Da

IEP (calculated)

8.242

GRAVY (calculated)

-0.579

Length

575 amino acids

Sequence
(BLAST)

001: MSSSTVKICF NSECTDRKSE RLKKGWRTRS GDCVELCDRC GSLYDEGRFC ETFHSNASGW RGCKSCAKRV HCGCIASIHS FTLLDTGGIE CIPCARKNVV
101: LTPNPAWPPH FFLPLPERLK DPVKNWSQSQ PVWRASNLFN TSIPQSDLRP RMPSEADLST GVDRLIVSER SSASSMEKKK IEDSSERSMN GGLKLGALEM
201: LENGNSGTNC EEQPASCVNI PQQSSSLNDD HSAPLLSLAV PYASSSETNG QTVVSGTLSQ PTPSPPLAKK FSGHPHNGVD SSGEAQVRNG RPRGDARGRN
301: QLLPRYWPRI TDQELQQISG DSNSVITPLF EKMLSASDAG RIGRLVLPKK CAEAYFPAIS QPEGLPLKVQ DAKGHEWIFQ FRFWPNNNSR MYVLEGVTPC
401: IQSMQLQAGD TVTFSRLEPE GKLVMGFRKA STAPSSDQGN ETIKTGNGGS THGDVSIRKT KTGEVALTNR HLKSSLGSPS FSSMDQADLA DPASAWSKVD
501: KSGYIAKEAL GAKSSIPRKR KNSTLGSKSK RLRIENEDLI ELKLTWEEAQ GLLRPPLNHV PNVVVIEGYE FEEYE

Best Arabidopsis Sequence Match ( AT4G21550.3 )
(BLAST)

001: MLSSSSMSSS SLSARFCFNH ECFEFKLDHC RPGWRLRSGD FVDLCDRCAS AYEQGKFCDV FHQRASGWRC CESCGKRIHC GCIASASAYT LMDAGGIECL
101: ACARKKFALG PNFSPSPSFL FQSPISEKFK DLSINWSSST RSNQISYQPP SCLDPSVLQF DFRNRGGNNE FSQPASKERV TACTMEKKRG MNDMIGKLMS
201: ENSKHYRVSP FPNVNVYHPL ISLKEGPCGT QLAFPVPITT PIEKTGHSRL DGSNLWHTRN SSPLSRLHND LNGGADSPFE SKSRNVMAHL ETPGKYQVVP
301: RFWPKVSYKN QVLQNQSKES ESVVTPLFEK ILSATDTGKR LVLPKKYAEA FLPQLSHTKG VPLTVQDPMG KEWRFQFRFW PSSKGRIYVL EGVTPFIQTL
401: QLQAGDTVIF SRLDPERKLI LGFRKASITQ SSDQADPADM HSPFEVKKSA YITKETPGVE CSSGKKKSSM MITRSKRQKV EKGDDNLLKL TWEEAQGFLL
501: PPPNLTPSRV VIEDYEFEEY EVHPYVFALI CISGLCRLRI LFSFRFFRIW L

Arabidopsis Description

VAL3VP1/ABI3-like 3 [Source:TAIR;Acc:AT4G21550]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.