Factsheet for GSMUA_Achr8P03800_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P23790_001	Banana	nucleus	69.4	63.78
GSMUA_Achr7P00120_001	Banana	nucleus, plastid	67.56	61.95
VIT_00s0181g00260.t01	Wine grape	nucleus	35.86	50.96
Os07t0563300-01	Rice	nucleus	58.26	49.84
KRH10760	Soybean	nucleus	52.88	49.2
KRH21568	Soybean	nucleus	52.63	48.92
HORVU2Hr1G040400.1	Barley	nucleus	24.72	47.87
TraesCS2A01G204300.1	Wheat	plastid	56.3	47.72
TraesCS2D01G211600.2	Wheat	plastid	56.06	47.51
TraesCS2B01G231800.1	Wheat	plastid	55.81	47.5
HORVU2Hr1G040410.4	Barley	nucleus, plastid	56.43	47.19
KXG36480	Sorghum	nucleus	55.2	46.59
Zm00001d021790_P010	Maize	nucleus	54.22	45.81
Zm00001d006597_P003	Maize	plastid	53.98	45.7
GSMUA_Achr5P27940_001	Banana	nucleus	11.26	41.82
GSMUA_Achr5P27930_001	Banana	nucleus	27.91	39.31
AT4G21550.1	Thale cress	nucleus, plastid	33.05	37.76
GSMUA_Achr8P01750_001	Banana	nucleus	39.29	37.46
Bra013535.1-P	Field mustard	nucleus	31.46	36.77
CDX79071	Canola	nucleus	31.95	36.15
CDX82834	Canola	nucleus	31.82	35.96
Solyc02g079020.2.1	Tomato	nucleus	45.17	35.38
GSMUA_Achr3P00120_001	Banana	nucleus	6.24	28.18
PGSC0003DMT400057590	Potato	nucleus	13.34	23.59
GSMUA_Achr8P18070_001	Banana	nucleus	5.63	22.12
GSMUA_Achr3P32440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	5.26	21.18
GSMUA_AchrUn_...	Banana	nucleus	9.18	11.06
GSMUA_Achr7P23040_001	Banana	nucleus	8.69	9.69

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr8G03800_001	EnsemblPlants:GSMUA_Achr8P03800_001
EnsemblPlants:GSMUA_Achr8T03800_001	InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300	UniProt:M0TMD3	PFAM:PF02362
PFAM:PF07496	PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336	PANTHER:PTHR23336:SF10	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI0002950908	InterPro:Znf_CW	SEG:seg	:	:

Description

B3 domain-containing protein Os07g0563300 [Source:GMGC_GENE;Acc:GSMUA_Achr8G03800_001]

Coordinates

chr8:+:2625585..2640998

Molecular Weight (calculated)

90831.9 Da

IEP (calculated)

8.505

GRAVY (calculated)

-0.585

Length

817 amino acids

Sequence
(BLAST)

001: MSSPTSVSLS GGKICFNSHC KEVILDHTPP RKKGGWRLRS GEIAELCDRC SCAFEQGSFC ETFHSDVAGW RNCEACGKRV HCGCVASAPT YVFLDVGGVE
101: CIACARKSLA MAPNQMLSSP MLMHQHVSER RDLPVKSGRP ITSPFSGQWR QAPHMWNMTS LQSDLQQRLS YEFDRPSNIE KLAPGGRHSI SAHEKKFEEL
201: PERIMSGSHN NIARDRYAHG NTVIPDPCST SSGVKIEAKA NSSIKLQPLP ISKEDSSPLI GLAAPFSSTN GSREPMKFLS NQPPQLTTSP LPKQFYPEGI
301: ADTELQIQMR NGRARVDARS RTQLLPRYWP RITDQELQQI SGDTNSVITP LFEKMLSASD AGRIGRLVLP KKCAEAYFPT ISQPEGLPLK VQDASGKDWV
401: FQFRFWPNNN SRMYVLEGVT PCIQAMQLQA GDTVTFSRID PEGKLVMGFR KASSGSTEQD TQTHISGSDF STPPEADKSS WPKFTKAGFI QQDGPAARSL
501: QVPSKRKAST LGSKSKRLRI ENEESMELKL TWEEAQELLR PPPNSSPGIV VIEGHEFEEY EEAPVLGKRT YFTTNPAGEN YQWAQCEDCL KWRKLPIDAL
601: LPFKWTCTEN VSDPQRSSCS SAQELNLEQI AAMISCKTDA SKRAKVKVES NNIEVSDGLD TLANLAILGE GKNLPTSQPT TRHPRHRPGC TCIVCIQPPS
701: GKGPKHKQTC TCNVCLTVKR RFRTLMLRRE KRQSEKESET ARKQQQKPML PSSEVLPQVK SDPSSTGPGD DNASQKEIAS NDTIKGNYTN KQVVILPSLS
801: SYPETLSLVS FVFYYYW

Best Arabidopsis Sequence Match ( AT4G32010.2 )
(BLAST)

001: MESIKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG CAYEQSIFCE VFHAKESGWR ECNSCDKRLH CGCIASRFMM ELLENGGVTC ISCAKKSGLI
101: SMNVSHESNG KDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTHSSLQMK QEESLLPSSL DALRHKTERK ELSAQPNLSI SLGPTLMTSP FHDAAVDDRS
201: KTNSIFQLAP RSRQLLPKPA NSAPIAAGME PSGSLVSQIH VARPPPEGRG KTQLLPRYWP RITDQELLQL SGHSNSKIIP LFEKVLSASD AGRIGRLVLP
301: KACAEAYFPP ISLPEGLPLK IQDIKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRTE PEGKLVMGYR KATNSTATQM FKGSSEPNLN
401: MFSNSLNPGC GDINWSKLEK SEDMAKDNLF LQSSLTSARK RVRNIGTKSK RLLIDSVDVL ELKITWEEAQ ELLRPPQSTK PSIFTLENQD FEEYDEPPVF
501: GKRTLFVSRQ TGEQEQWVQC DACGKWRQLP VDILLPPKWS CSDNLLDPGR SSCSAPDELS PREQDTLVRQ SKEFKRRRLA SSNEKLNQSQ DASALNSLGN
601: AGITTTGEQG EITVAATTKH PRHRAGCSCI VCSQPPSGKG KHKPSCTCTV CEAVKRRFRT LMLRKRNKGE AGQASQQAQS QSECRDETEV ESIPAVELAA
701: GENIDLNSDP GASRVSMMRL LQAAAFPLEA YLKQKAISNT AGEQQSSDMV STEHGSSSAA QETEKDTTNG AHDPVN

Arabidopsis Description

VAL2B3 domain-containing transcription repressor VAL2 [Source:UniProtKB/Swiss-Prot;Acc:Q5CCK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.