Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057590 | Potato | nucleus | 36.15 | 81.6 |
| KRH21568 | Soybean | nucleus | 45.83 | 54.38 |
| KRH10760 | Soybean | nucleus | 45.54 | 54.1 |
| VIT_00s0181g00260.t01 | Wine grape | nucleus | 29.82 | 54.09 |
| GSMUA_Achr7P00120_001 | Banana | nucleus, plastid | 39.21 | 45.9 |
| GSMUA_Achr8P03800_001 | Banana | nucleus | 35.38 | 45.17 |
| GSMUA_Achr4P23790_001 | Banana | nucleus | 37.58 | 44.09 |
| Os07t0563300-01 | Rice | nucleus | 37.3 | 40.73 |
| TraesCS2B01G231800.1 | Wheat | plastid | 37.01 | 40.21 |
| TraesCS2D01G211600.2 | Wheat | plastid | 37.1 | 40.15 |
| TraesCS2A01G204300.1 | Wheat | plastid | 37.1 | 40.15 |
| HORVU2Hr1G040410.4 | Barley | nucleus, plastid | 37.39 | 39.92 |
| Zm00001d006597_P003 | Maize | plastid | 35.76 | 38.65 |
| Zm00001d021790_P010 | Maize | nucleus | 35.76 | 38.57 |
| KXG36480 | Sorghum | nucleus | 35.67 | 38.43 |
| AT4G21550.1 | Thale cress | nucleus, plastid | 25.98 | 37.9 |
| Solyc06g082520.2.1 | Tomato | nucleus | 30.39 | 37.51 |
| Bra013535.1-P | Field mustard | nucleus | 25.12 | 37.48 |
| CDX82834 | Canola | nucleus | 25.6 | 36.93 |
| CDX79071 | Canola | nucleus | 25.12 | 36.29 |
| HORVU2Hr1G040400.1 | Barley | nucleus | 14.57 | 36.02 |
| Solyc10g075030.1.1 | Tomato | nucleus | 30.2 | 35.84 |
| Solyc10g006830.2.1 | Tomato | cytosol, plastid | 3.64 | 33.04 |
| Solyc02g094460.1.1 | Tomato | nucleus | 5.08 | 19.34 |
| Solyc06g083590.2.1 | Tomato | nucleus | 7.19 | 12.95 |
| Solyc06g083600.1.1 | Tomato | nucleus | 6.71 | 11.29 |
Protein Annotations
| MapMan:15.5.5.4 | Gene3D:2.40.330.10 | Gene3D:3.30.40.100 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003340 | InterPro:IPR011124 | InterPro:IPR015300 |
| UniProt:K4B9C6 | PFAM:PF02362 | PFAM:PF07496 | PFscan:PS50863 | PFscan:PS51050 | PANTHER:PTHR23336 |
| PANTHER:PTHR23336:SF10 | SMART:SM01019 | SUPFAM:SSF101936 | EnsemblPlantsGene:Solyc02g079020.2 | EnsemblPlants:Solyc02g079020.2.1 | UniParc:UPI0002768694 |
| InterPro:Znf_CW | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:43638584..43649841
Molecular Weight (calculated)
114552.0 Da
IEP (calculated)
6.157
GRAVY (calculated)
-0.614
Length
1043 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSSAAASGN VCFNSNCKEF VEKTRKGWRR RTGEFAELCD RCGSAYDDGK FCDAFHLNSS GWRSCESCGK QIHCGCIVSF HTFVLLDAGG IECIACARKS
0101: FILPERIKDV NNWNPIAGSG PVPWRQAPSL FNGSTNQNEL QHKAPFPEAT VSIDRLSLGE RPFALLSDNN RKDSCEKLMN GKLKIGVPGT PEDGYAGSNR
0201: DEAHKSCLSA PWQSSYANSE LSAPSFCLTV GSASKNEPTV HSKVSVSVPQ KTTLSIPLPL GKQLGGHATV DSAGETQVKS SKIRGDGRGK NQLLPRYWPR
0301: ITDQELRRLS EDSNSVITPL FEKMLSASDA GRIGRLVLPK KCAEAYFPPI SNPEGLPLKM QDLKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG
0401: DTVTFSRIEP EGKLVMGCRK ASNILTADQG SEACSNGNGV ATNGNASTKH TKSSEEVLAN STKKGSSSTT LVAATSARAE IKMSDDLVNE SLGTNRPIRC
0501: KRKGSTMGSK RKRMRIDNDN LVELKVTVVQ AQGLMRPPSS GAPTVIVIEG CEFEEYEQED APIIGRPTIP HMDQLGEKIQ WVQCEDCFKW RKVPDNVDLP
0601: SRWTCSDNSC DPERSVCSAV QELTADHLRD LLPHINKASK KRKASKQEMD LVETLDGLDA LAHLAILEEG ETLPASPQAT TKHPRHRPGC TCIVCIQPPS
0701: GKGPKHKQSC DCNVCKSVKR RFKTLMMKRE KKLSEKEAEA TCQKLQPQSA GQLLDADDIQ EPIDDAVHSS PQHEELNIEG SVDPNYLNEK KSSVEDPNYL
0801: DEKKSSVDDT NYLSEKISSV DDPSYLNEKE SSVDDPNILN EKKSSVDDPN CLNEKKSAVD DPNYVDERKS SVDDPNCLKE KKSSASPFKG EFDLNAKPDR
0901: DDELSPGSDS GSMMRMIKRA AEQYVRHCDN GSSVGNQRDG DGAGETNPGN CVIVSGSHQA DVDHNRPLPI SAAASLAPND QLHFAMAASM SETHKFWESN
1001: GDLNLEIVLE EQPLVTERRV LSIVYMVVSL LDLIWDSKLV GLD
0101: FILPERIKDV NNWNPIAGSG PVPWRQAPSL FNGSTNQNEL QHKAPFPEAT VSIDRLSLGE RPFALLSDNN RKDSCEKLMN GKLKIGVPGT PEDGYAGSNR
0201: DEAHKSCLSA PWQSSYANSE LSAPSFCLTV GSASKNEPTV HSKVSVSVPQ KTTLSIPLPL GKQLGGHATV DSAGETQVKS SKIRGDGRGK NQLLPRYWPR
0301: ITDQELRRLS EDSNSVITPL FEKMLSASDA GRIGRLVLPK KCAEAYFPPI SNPEGLPLKM QDLKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG
0401: DTVTFSRIEP EGKLVMGCRK ASNILTADQG SEACSNGNGV ATNGNASTKH TKSSEEVLAN STKKGSSSTT LVAATSARAE IKMSDDLVNE SLGTNRPIRC
0501: KRKGSTMGSK RKRMRIDNDN LVELKVTVVQ AQGLMRPPSS GAPTVIVIEG CEFEEYEQED APIIGRPTIP HMDQLGEKIQ WVQCEDCFKW RKVPDNVDLP
0601: SRWTCSDNSC DPERSVCSAV QELTADHLRD LLPHINKASK KRKASKQEMD LVETLDGLDA LAHLAILEEG ETLPASPQAT TKHPRHRPGC TCIVCIQPPS
0701: GKGPKHKQSC DCNVCKSVKR RFKTLMMKRE KKLSEKEAEA TCQKLQPQSA GQLLDADDIQ EPIDDAVHSS PQHEELNIEG SVDPNYLNEK KSSVEDPNYL
0801: DEKKSSVDDT NYLSEKISSV DDPSYLNEKE SSVDDPNILN EKKSSVDDPN CLNEKKSAVD DPNYVDERKS SVDDPNCLKE KKSSASPFKG EFDLNAKPDR
0901: DDELSPGSDS GSMMRMIKRA AEQYVRHCDN GSSVGNQRDG DGAGETNPGN CVIVSGSHQA DVDHNRPLPI SAAASLAPND QLHFAMAASM SETHKFWESN
1001: GDLNLEIVLE EQPLVTERRV LSIVYMVVSL LDLIWDSKLV GLD
001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS
Arabidopsis Description
VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.