Factsheet for VIT_07s0005g05400.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g02290.t01
VIT_04s0008g02310.t01
VIT_11s0016g03530.t01
VIT_14s0081g00080.t01
VIT_17s0000g06570.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	VIT_14s0081g00080.t01	AT1G08780.1	10743655
AT3G24650.1	VIT_11s0016g03530.t01	AT3G22320.1	10743655
AT3G24650.1	VIT_04s0008g02290.t01	AT5G20910.1	10743655
AT3G24650.1	VIT_04s0008g02310.t01	AT5G20910.1	10743655
AT3G24650.1	VIT_17s0000g06570.t01	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46807	Soybean	nucleus	52.66	50.72
KRG99861	Soybean	nucleus	52.25	50.53
PGSC0003DMT400051934	Potato	nucleus	41.75	49.35
AT3G24650.1	Thale cress	nucleus	48.43	49.31
CDY15121	Canola	nucleus	44.88	48.96
Solyc06g083600.1.1	Tomato	nucleus	41.2	48.71
PGSC0003DMT400051746	Potato	nucleus	38.47	48.62
CDX93029	Canola	nucleus	47.61	48.61
Bra013248.1-P	Field mustard	nucleus	47.48	48.54
Solyc06g083590.2.1	Tomato	nucleus	38.06	48.19
OQU89229	Sorghum	nucleus	23.6	43.03
GSMUA_AchrUn_...	Banana	nucleus	37.11	40.12
GSMUA_Achr7P23040_001	Banana	nucleus	36.29	36.29
Zm00001d042396_P003	Maize	nucleus	33.97	36.03
HORVU3Hr1G092690.2	Barley	nucleus	33.02	35.48
TraesCS3B01G452200.1	Wheat	nucleus	33.29	35.47
TraesCS3D01G412800.1	Wheat	nucleus	33.29	35.26
EES04085	Sorghum	nucleus	33.56	35.09
TraesCS3A01G417300.1	Wheat	nucleus	32.88	34.83
Os01t0911700-02	Rice	nucleus	33.97	34.25
VIT_14s0068g01290.t01	Wine grape	nucleus	12.14	31.01
VIT_10s0071g00270.t01	Wine grape	nucleus	10.64	25.57
VIT_19s0014g03560.t01	Wine grape	nucleus	6.55	19.28
VIT_00s0181g00260.t01	Wine grape	nucleus	10.1	12.87
VIT_06s0004g08100.t01	Wine grape	nucleus	11.05	9.32
VIT_08s0058g01300.t01	Wine grape	nucleus	10.5	8.33

Protein Annotations

EntrezGene:100854233	wikigene:100854233	MapMan:15.5.5.5	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	ProteinID:CCB60239
ProteinID:CCB60239.1	InterPro:DNA-bd_pseudobarrel_sf	UniProt:F6HZX3	EMBL:FN596502	GO:GO:0000003	GO:GO:0001076
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009657	GO:GO:0009719	GO:GO:0009733	GO:GO:0009737
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0016043	GO:GO:0031930
GO:GO:0045893	InterPro:IPR003340	InterPro:IPR015300	EntrezGene:LOC100854233	wikigene:LOC100854233	PFAM:PF02362
PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	SMART:SM01019	SUPFAM:SSF101936	TIGR:TC65114
UniParc:UPI000198591A	ArrayExpress:VIT_07s0005g05400	EnsemblPlantsGene:VIT_07s0005g05400	EnsemblPlants:VIT_07s0005g05400.t01	unigene:Vvi.7567	RefSeq:XP_003632397
RefSeq:XP_003632397.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:9431080..9434467

Molecular Weight (calculated)

81069.9 Da

IEP (calculated)

5.175

GRAVY (calculated)

-0.883

Length

733 amino acids

Sequence
(BLAST)

001: MKGIEVDDGG DLHANDGVGL GDTGGCAGGT DTTGFDAMED EAMGVGDGEI WLDRDPDDLL DVHDNSIFYG DFPPLPDFPC MSSSSSSSSA PAPVKSIACS
101: SSSSSASSSS AASWAVLKSD AEVDEDKKNH RDHHDPVEVP PAALSSTASM EIPQEAPDQG LEDVDCINVM ENFGYMDLLE PNDIWDPSSL FHMDDSHDFE
201: AEQQPQQEQE QPKPQPELPP QQQDEEFMVQ RNDEEGQRPS EDLAMVFFEW LKSNKESISP EDLRNIKLKR ATIECAAKRL GGGKEGMKQL LKLILEWVQN
301: HQLQKKRISE TQISHFPYNY QDPYATQSPN PNPSPIPNIN CNPIPPDPNP CFPSPHWLPQ SPYMTDPSPV MAPPPFPPMV GYMGDPFANG PSNINSHPYQ
401: STSEYHILDS TNTWQPSQFS LPSPYTSFPE SNLPLAPAPQ PPQAFAGYGN QFTYQYFPGN GERLTRLGSS ATKEARKKRM ARQRRVFSHH HRHHNHHNQQ
501: QQNPSPDQQA RPAGNEGCNS AAQANQANWV FWPSAGAASN SPAGAPDAPQ PQPPPPPPPA VDRQAGQAQN NPRQLAAERR QGWKPEKNLK FLLQKVLKQS
601: DVGNLGRIVL PKKEAETHLP ELEARDGITI PMEDIGTSRV WNMRYRFWPN NKSRMYLLEN TGDFVRSNGL QEGDFIVLYS DVKCGKYMIR GVKVRQSGPK
701: SESKRSGKSQ RNQQTASPAG NGSTPSLSKR TTK

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.