Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0005g05400.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08780.1 | VIT_07s0005g05400.t01 | AT3G24650.1 | 10743655 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG92689 | Soybean | cytosol | 88.89 | 88.89 |
| KRH34096 | Soybean | cytosol | 87.3 | 87.3 |
| Solyc01g097300.2.1 | Tomato | cytosol | 84.13 | 82.81 |
| PGSC0003DMT400050100 | Potato | cytosol | 83.33 | 82.03 |
| Zm00001d013708_P001 | Maize | cytosol | 76.98 | 76.98 |
| EER91208 | Sorghum | cytosol | 76.98 | 76.98 |
| CDX93538 | Canola | cytosol | 78.57 | 76.74 |
| Bra018601.1-P | Field mustard | cytosol | 77.78 | 75.97 |
| Os03t0628900-01 | Rice | cytosol | 75.4 | 75.4 |
| CDX95034 | Canola | cytosol | 76.98 | 75.19 |
| CDY31129 | Canola | cytosol | 76.98 | 74.05 |
| Bra030740.1-P | Field mustard | cytosol | 76.98 | 74.05 |
| TraesCS5D01G388600.1 | Wheat | cytosol | 73.81 | 73.81 |
| AT1G08780.1 | Thale cress | cytosol | 74.6 | 72.87 |
| GSMUA_Achr4P17760_001 | Banana | cytosol | 84.13 | 66.67 |
| CDY66241 | Canola | cytosol | 76.19 | 61.54 |
| HORVU5Hr1G093710.1 | Barley | cytosol, plastid, vacuole | 26.19 | 16.67 |
Protein Annotations
| Gene3D:1.10.287.370 | EntrezGene:100243376 | wikigene:100243376 | MapMan:20.3.2.4 | ProteinID:CBI35206 | ProteinID:CBI35206.3 |
| ncoils:Coil | UniProt:D7TXF1 | EMBL:FN596256 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006457 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016272 | GO:GO:0051082 | GO:GO:0051087 | InterPro:IPR009053 |
| EntrezGene:LOC100243376 | wikigene:LOC100243376 | PFAM:PF01920 | InterPro:PFDN4 | InterPro:PFD_beta-like | PIRSF:PIRSF016477 |
| PANTHER:PTHR21100 | InterPro:Prefoldin | SUPFAM:SSF46579 | TIGR:TC61924 | UniParc:UPI0001984B3C | ArrayExpress:VIT_14s0081g00080 |
| EnsemblPlantsGene:VIT_14s0081g00080 | EnsemblPlants:VIT_14s0081g00080.t01 | RefSeq:XP_002264422 | RefSeq:XP_002264422.1 | SEG:seg | : |
Description
Prefoldin subunit 4 [Source:UniProtKB/TrEMBL;Acc:D7TXF1]
Coordinates
chr14:+:7630626..7635417
Molecular Weight (calculated)
14794.3 Da
IEP (calculated)
4.208
GRAVY (calculated)
-0.965
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQSGGSETE VTWEDQQNIN KFGRLNNRFH ELEDEIKMAK ETNENLEDAS NELILTDEEM VRFQIGEVFA HVPKEEVEER IEQMKEVTSK KLEKLEEEKD
101: SVVAQMAELK KILYGKFKES INLEED
101: SVVAQMAELK KILYGKFKES INLEED
001: MQQQGSKSGS EMEVTWEDQQ NINIFSRLNN RVHDLDDDIK SAKEKCENLE DAGNELILAD EEMVRFQIGE VFAHVPRDDV ETKIEEMKEA TCKSLEKLEQ
101: EKESIVTQMA ALKKVLYAKF KDSINLEED
101: EKESIVTQMA ALKKVLYAKF KDSINLEED
Arabidopsis Description
AIP3Probable prefoldin subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4B5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.