Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013248.1-P | Field mustard | nucleus | 86.94 | 87.31 |
| CDY15121 | Canola | nucleus | 81.39 | 87.2 |
| CDX93029 | Canola | nucleus | 86.81 | 87.05 |
| VIT_07s0005g05400.t01 | Wine grape | nucleus | 49.31 | 48.43 |
| KRH46807 | Soybean | nucleus | 47.78 | 45.2 |
| KRG99861 | Soybean | nucleus | 47.08 | 44.72 |
| PGSC0003DMT400051746 | Potato | nucleus | 35.69 | 44.31 |
| Solyc06g083590.2.1 | Tomato | nucleus | 34.72 | 43.18 |
| PGSC0003DMT400051934 | Potato | nucleus | 36.25 | 42.1 |
| Solyc06g083600.1.1 | Tomato | nucleus | 36.11 | 41.94 |
| OQU89229 | Sorghum | nucleus | 21.39 | 38.31 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.58 | 36.73 |
| Zm00001d042396_P003 | Maize | nucleus | 32.64 | 34.01 |
| EES04085 | Sorghum | nucleus | 32.08 | 32.95 |
| GSMUA_Achr7P23040_001 | Banana | nucleus | 33.19 | 32.61 |
| Os01t0911700-02 | Rice | nucleus | 32.64 | 32.32 |
| TraesCS3B01G452200.1 | Wheat | nucleus | 30.83 | 32.27 |
| HORVU3Hr1G092690.2 | Barley | nucleus | 30.42 | 32.11 |
| TraesCS3A01G417300.1 | Wheat | nucleus | 30.69 | 31.94 |
| TraesCS3D01G412800.1 | Wheat | nucleus | 30.56 | 31.79 |
| AT3G26790.1 | Thale cress | nucleus | 11.39 | 26.2 |
| AT1G28300.1 | Thale cress | nucleus | 12.78 | 25.34 |
| AT4G21550.1 | Thale cress | nucleus, plastid | 10.42 | 10.49 |
| AT2G30470.1 | Thale cress | nucleus | 10.69 | 9.75 |
| AT4G32010.1 | Thale cress | nucleus | 10.42 | 9.62 |
Protein Annotations
| MapMan:15.5.5.5 | Gene3D:2.40.330.10 | EntrezGene:822061 | Symbol:ABI3 | ProteinID:ABR21503.1 | ProteinID:ABR21504.1 |
| ProteinID:ABR21505.1 | ProteinID:ABR21506.1 | ProteinID:ABR21507.1 | ProteinID:ABR21508.1 | ProteinID:ABR21509.1 | ProteinID:ABR21510.1 |
| ProteinID:ABR21511.1 | ProteinID:ABR21512.1 | ProteinID:ABR21513.1 | ProteinID:ABR21514.1 | ProteinID:ABR21515.1 | ProteinID:ABR21516.1 |
| ProteinID:ABR21517.1 | ProteinID:ABR21518.1 | ProteinID:ABR21519.1 | ProteinID:ABR21520.1 | ProteinID:ABR21521.1 | ProteinID:ABR21523.1 |
| ProteinID:ABR21524.1 | ProteinID:AEE76933.1 | EMBL:AK220739 | EMBL:AK220879 | ArrayExpress:AT3G24650 | EnsemblPlantsGene:AT3G24650 |
| RefSeq:AT3G24650 | TAIR:AT3G24650 | RefSeq:AT3G24650-TAIR-G | EnsemblPlants:AT3G24650.1 | TAIR:AT3G24650.1 | Unigene:At.19959 |
| InterPro:B3_DNA-bd | ProteinID:BAB01214.1 | ProteinID:BAE96106.1 | ProteinID:CAA05484.1 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0000003 |
| GO:GO:0001076 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009657 |
| GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009737 | GO:GO:0009738 | GO:GO:0009790 | GO:GO:0009791 |
| GO:GO:0009793 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0031930 | GO:GO:0045893 | InterPro:IPR003340 |
| InterPro:IPR015300 | RefSeq:NP_189108.1 | PFAM:PF02362 | PO:PO:0001040 | PO:PO:0007632 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009088 | PO:PO:0020121 | PFscan:PS50863 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF1 |
| UniProt:Q01593 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0000031744 | EMBL:X68141 | SEG:seg |
Description
ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
Coordinates
chr3:+:8997370..9001185
Molecular Weight (calculated)
79504.7 Da
IEP (calculated)
5.051
GRAVY (calculated)
-0.723
Length
720 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.