Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057590 | Potato | nucleus | 27.43 | 23.81 |
| VIT_19s0014g03560.t01 | Wine grape | nucleus | 2.49 | 4.02 |
| PGSC0003DMT400052167 | Potato | nucleus | 2.0 | 2.79 |
| PGSC0003DMT400051934 | Potato | nucleus | 0.75 | 0.48 |
| PGSC0003DMT400051746 | Potato | nucleus | 0.5 | 0.34 |
| PGSC0003DMT400064355 | Potato | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400078282 | EnsemblPlantsGene:PGSC0003DMG400030467 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011124 | InterPro:Znf_CW | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF28 | PFAM:PF07496 | PFscan:PS51050 |
| PGSC:PGSC0003DMG400030467 | SEG:seg | UniParc:UPI000295C677 | UniProt:M1CZT3 | MapMan:15.5.5.4 | : |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400030467]
Coordinates
chr6:-:57619926..57623337
Molecular Weight (calculated)
44400.2 Da
IEP (calculated)
5.513
GRAVY (calculated)
-0.802
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MADNLPNGGR TSDDTVNRQV PMSEKKKARN IGSKNKRLLM HADDAMELRI TWEEIQELLR PSPTAKPNIV VVEDCEFEEY EEAPVFGKRT IFTARSSGDQ
101: EQWAQCDSCA KWRRLPFHVL LPAKWTCSDN IWDSRRCSCA IPDEISPREL EALLRVGKDP KRRKLVENNE DLESSGLDAL ATVAASDMGD SIGDMGEPSV
201: GATTKHPRHR PGCSCIVCIQ PPSGKGKHHP TCKCNVCLTV KRRFKTLMLR KKKKQSDREA ELAQAKDQVP PKDEPETDGM TSGIELLQMN HSENERMNHS
301: DNEKNSNGDQ VEEFGPGKGQ LDLNCHPNRD DDMLAEATAG MSMTSLVNAT NLPLEYLTQN RLESLGNSLL SQAASESEGH HPDNGFVKTA DVEPGGKGAE
401: A
101: EQWAQCDSCA KWRRLPFHVL LPAKWTCSDN IWDSRRCSCA IPDEISPREL EALLRVGKDP KRRKLVENNE DLESSGLDAL ATVAASDMGD SIGDMGEPSV
201: GATTKHPRHR PGCSCIVCIQ PPSGKGKHHP TCKCNVCLTV KRRFKTLMLR KKKKQSDREA ELAQAKDQVP PKDEPETDGM TSGIELLQMN HSENERMNHS
301: DNEKNSNGDQ VEEFGPGKGQ LDLNCHPNRD DDMLAEATAG MSMTSLVNAT NLPLEYLTQN RLESLGNSLL SQAASESEGH HPDNGFVKTA DVEPGGKGAE
401: A
001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS
Arabidopsis Description
VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.