Factsheet for Bra021635.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra040510.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30470.1	Bra040510.1-P	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29672	Canola	nucleus	96.38	94.67
Bra022801.1-P	Field mustard	nucleus	78.42	77.52
Bra018313.1-P	Field mustard	nucleus	78.29	76.71
AT2G30470.1	Thale cress	nucleus	73.64	72.15
Bra023968.1-P	Field mustard	nucleus	44.57	44.81
Solyc06g082520.2.1	Tomato	nucleus	46.9	42.96
GSMUA_Achr5P27930_001	Banana	nucleus	31.52	42.07
KRH72829	Soybean	nucleus	39.02	42.06
VIT_06s0004g08100.t01	Wine grape	nucleus	47.16	42.0
KRH30646	Soybean	nucleus	49.35	41.93
KRH17186	Soybean	nucleus	38.37	41.02
KRG98129	Soybean	nucleus	49.48	40.96
GSMUA_Achr8P01750_001	Banana	nucleus	44.7	40.37
TraesCS2D01G105300.1	Wheat	nucleus	44.7	37.98
TraesCS2A01G105600.1	Wheat	nucleus	46.38	37.83
Os07t0679700-01	Rice	nucleus	46.38	37.83
EER99914	Sorghum	nucleus	46.51	37.62
TraesCS2B01G122500.1	Wheat	nucleus	45.99	37.47
Zm00001d022440_P005	Maize	plastid	45.87	36.86
HORVU2Hr1G017760.4	Barley	plastid	45.35	33.88
Zm00001d007173_P003	Maize	mitochondrion, nucleus	43.15	33.0
Bra013535.1-P	Field mustard	nucleus	28.04	31.04
Bra032953.1-P	Field mustard	nucleus	8.4	21.1
PGSC0003DMT400057590	Potato	nucleus	12.14	20.35
Bra025229.1-P	Field mustard	nucleus	6.59	18.75
Zm00001d037893_P001	Maize	mitochondrion	6.46	17.86
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.59	17.41
Zm00001d045970_P001	Maize	mitochondrion	5.43	16.28
Bra030087.1-P	Field mustard	nucleus	6.46	14.53
Bra032890.1-P	Field mustard	nucleus	6.2	13.56
Bra013248.1-P	Field mustard	nucleus	9.82	10.6
Zm00001d029836_P001	Maize	plastid	0.65	5.68

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra021635	EnsemblPlants:Bra021635.1
EnsemblPlants:Bra021635.1-P	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300	UniProt:M4DYN9	PFAM:PF02362
PFAM:PF07496	PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336	PANTHER:PTHR23336:SF28	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI00025445FB	InterPro:Znf_CW	SEG:seg	:	:

Description

AT2G30470 (E=3e-301) HSI2, VAL1 | HSI2 (HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2); transcription factor/ transcription repressor

Coordinates

chrA04:-:13572907..13576425

Molecular Weight (calculated)

84756.8 Da

IEP (calculated)

6.924

GRAVY (calculated)

-0.641

Length

774 amino acids

Sequence
(BLAST)

001: MCMNASCGST STVEWKKGWP LRSGALADLC FRCGSAYETS LFCETFHLDQ SGWRECYLCN KRLHCGCIAS KLVVEFMDFG GVGCTTCTNC HQPNLNNRGE
101: NPGLFSRLPM NRQHTNGESG MNVGKADLFS QPLVQGDDKR EEFMPHRGFS NLMKPDNATT TGYRHDANGT HESSPTPSQP PSLNMPMAAL PYSLNFATAT
201: KKLMDAASQS HTVQSSASGI LQTPSKSVPG TPSGPGTSKS AQARIGRPPN EGRGRSHLLP RYWPKYTDKE LQQISGNLNL NIVPLFEKTL SASDAGRIGR
301: LVLPKACAEA YFPPISQSEG IPLKIQDVRG KEWTFQFRFW PNNNSRMYVL EGVTPCIQSM MLQAGDTVTF SRVDPGGKLI MGFRKAAHTG VIQGCGLTNG
401: TSNEDTSSSG VTETPTSVNA SSCPAQTPEE LKGLPEHLNS NHGGSSLKKS EVNGVKDKKR TRTVGAKHKR MLWRSEEAME VRITWEETQE LIRPSPSEKP
501: TVVVIEEHEF EEFNEPPVFG KRTIVTSRPS GEQERWGSCD DCSKWRRLPV DALLPAKWTC SDNVWDESRC SCSAPEESLK ELENVLRMSK EYKKRRSGVS
601: QTVRTEEELT GLDALASAAA LGDTLGEEEE PATTTRHPRH RVGCSCIVCI QPPSGKGRHN SSCLCTVCST VKRRFKTLMM RRKKKQLERE EIEAAVAAAA
701: DQENKEDGKT GRIDLNSDPC NRGDVEAVGV EEKDESEKGE AGGCLGVAQA DDVVGVTELE GEGEKIGEES KGSS

Best Arabidopsis Sequence Match ( AT2G30470.1 )
(BLAST)

001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS

Arabidopsis Description

VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.